GORULE Violations Assigned by Xenbase

Generated by GOA at EMBL-EBI logo - 2026-07-25 08:02:48.476960

Total Lines

339896

Xenbase

869

Valid Lines

778 (89.53%)

Total Problems Detected

91

File Header

!gpa-version: 1.2
!collation date: 2026-07-22
RuleDescriptionCount
⛔️GORULE:0000001 GAF lines are parsed according to GAF 2.2 specifications 3
✅GORULE:0000002 No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515' 0
✅GORULE:0000005 IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to protein binding ; GO:0005515 or GO:0005488 binding 0
✅GORULE:0000006 IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC 0
✅GORULE:0000007 IPI should not be used with GO:0003824 catalytic activity or descendants 0
⛔️GORULE:0000008 No annotations should be made to uninformative high level terms 5
✅GORULE:0000011 ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND 0
✅GORULE:0000013 Taxon-appropriate annotation check 0
✅GORULE:0000015 Dual species taxon check 0
✅GORULE:0000016 With/From: IC annotations require a With/From GO ID 0
✅GORULE:0000017 IDA annotations must not have a With/From entry 0
✅GORULE:0000018 IPI annotations require a With/From entry 0
⛔️GORULE:0000020 Automatic repair of annotations to merged or obsoleted terms 2
✅GORULE:0000022 Check for, and filter, annotations made to retracted publications 0
⛔️GORULE:0000027 Each identifier in GAF is valid 90
✅GORULE:0000030 Obsolete GO_REFs are not allowed 0
✅GORULE:0000033 Group-specific Reference IDs are not allowed, only public reference IDs (PMID, doi, or GO_REF) 0
✅GORULE:0000039 Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants 0
✅GORULE:0000042 Qualifier: IKR evidence code requires a NOT qualifier 0
✅GORULE:0000043 Check for valid combination of evidence code and GO_REF 0
✅GORULE:0000046 The 'with' field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to 'self-binding' terms. 0
✅GORULE:0000050 Annotations to ISS, ISA and ISO should not be self-referential 0
✅GORULE:0000053 'NOT' annotation should not have extension 0
✅GORULE:0000055 References should have only one ID per ID space 0
✅GORULE:0000063 Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column) 0
⚠️GORULE:0000065 Term candidate for obsoletion 6

Messages

⛔️ GORULE:0000001-GAF lines are parsed according to GAF 2.2 specifications

  • Total Violations: 3
  • Line 15691 – Xenbase XB-GENE-6252596 involved_in GO:0031640 PMID:35073323 ECO:0000314 taxon:2104 20220429 Xenbase part_of(GO:0045087) noctua-model-id=gomodel:626b20c100000170|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000001-GPAD lines are parsed according to GPAD 1.2 specifications-Interacting Taxon ID must be a numeric NCBI taxon ID
  • Line 33396 – Xenbase XB-GENE-17333137 acts_upstream_of_or_within GO:0016055 38499770 ECO:0007089 20240402 Xenbase noctua-model-id=gomodel:6606056e00000416|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000001-GPAD lines are parsed according to GPAD 1.2 specifications-Bad reference syntax (namespace missing)
  • Line 33397 – Xenbase XB-GENE-17333137 acts_upstream_of_or_within GO:0001755 38499770 ECO:0007089 20240402 Xenbase noctua-model-id=gomodel:6606056e00000416|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000001-GPAD lines are parsed according to GPAD 1.2 specifications-Bad reference syntax (namespace missing)

✅ GORULE:0000002-No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

  • All checks passed - 0 violations

✅ GORULE:0000005-IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to protein binding ; GO:0005515 or GO:0005488 binding

  • All checks passed - 0 violations

✅ GORULE:0000006-IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

  • All checks passed - 0 violations

✅ GORULE:0000007-IPI should not be used with GO:0003824 catalytic activity or descendants

  • All checks passed - 0 violations

⛔️ GORULE:0000008-No annotations should be made to uninformative high level terms

  • Total Violations: 5
  • Line 781 – Xenbase XB-GENE-483735 acts_upstream_of_or_within GO:0007258 PMID:16026968 ECO:0006063 20190411 Xenbase noctua-model-id=gomodel:5a7e68a100000628|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000008-No annotations should be made to uninformative high level terms
  • Line 784 – Xenbase XB-GENE-17340943 acts_upstream_of_or_within GO:0007258 PMID:16026968 ECO:0006063 20181026 Xenbase noctua-model-id=gomodel:5a7e68a100000628|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000008-No annotations should be made to uninformative high level terms
  • Line 13114 – Xenbase XB-GENE-919827 acts_upstream_of_or_within GO:0048856 PMID:32196547 ECO:0000315 20220118 Xenbase results_in_development_of(XAO:0003029) model-state=production|noctua-model-id=gomodel:61e0e55600000483|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000008-No annotations should be made to uninformative high level terms
  • Line 16562 – Xenbase XB-GENE-487200 enables GO:0008134 PMID:32894225 ECO:0006051 Xenbase:XB-MORPHOLINO-17249330 20220613 Xenbase part_of(GO:1904837) noctua-model-id=gomodel:62900b6400001096|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000008-No annotations should be made to uninformative high level terms
  • Line 16693 – Xenbase XB-GENE-6488002 acts_upstream_of_or_within_negative_effect GO:0006468 PMID:32859582 ECO:0000314 20230711 Xenbase has_input(Xenbase:XB-GENE-17332607) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:62900b6400002070
    GORULE:0000008-No annotations should be made to uninformative high level terms

✅ GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

  • All checks passed - 0 violations

✅ GORULE:0000013-Taxon-appropriate annotation check

  • All checks passed - 0 violations

✅ GORULE:0000015-Dual species taxon check

  • All checks passed - 0 violations

✅ GORULE:0000016-With/From: IC annotations require a With/From GO ID

  • All checks passed - 0 violations

✅ GORULE:0000017-IDA annotations must not have a With/From entry

  • All checks passed - 0 violations

✅ GORULE:0000018-IPI annotations require a With/From entry

  • All checks passed - 0 violations

⛔️ GORULE:0000020-Automatic repair of annotations to merged or obsoleted terms

  • Total Violations: 2
  • Line 6161 – Xenbase XB-GENE-5846983 enables GO:1904929 PMID:28427856 ECO:0007752 20230302 Xenbase model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:5fadbcf000000317
    GORULE:0000020-Automatic repair of annotations to merged or obsoleted terms
  • Line 17403 – Xenbase XB-GENE-17337757 enables GO:0060725 PMID:20858598 ECO:0006063 20231219 Xenbase noctua-model-id=gomodel:62b4ffe300003420|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000020-Automatic repair of annotations to merged or obsoleted terms

✅ GORULE:0000022-Check for, and filter, annotations made to retracted publications

  • All checks passed - 0 violations

⛔️ GORULE:0000027-Each identifier in GAF is valid

  • Total Violations: 90
  • Line 4166 – Xenbase XB-GENE-22169574 acts_upstream_of_or_within GO:0031099 PMID:31644900 ECO:0006051 Xenbase:XB-MORPHOLINO-22201535 20200410 Xenbase results_in_maturation_of(XAO:0003026) noctua-model-id=gomodel:5e72450500001671|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 4727 – Xenbase XB-GENE-483568 is_active_in GO:0005770 PMID:30612743 ECO:0007118 Xenbase:XB-Transgene-1234567890 20200619 Xenbase part_of(XAO:0004100),part_of(XAO:0005015) model-state=production|noctua-model-id=gomodel:5ed1aab700000170|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-Transgene-1234567890
  • Line 4727 – Xenbase XB-GENE-483568 is_active_in GO:0005770 PMID:30612743 ECO:0007118 Xenbase:XB-Transgene-1234567890 20200619 Xenbase part_of(XAO:0004100),part_of(XAO:0005015) model-state=production|noctua-model-id=gomodel:5ed1aab700000170|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 4728 – Xenbase XB-GENE-482015 acts_upstream_of_or_within GO:0048675 PMID:30612743 ECO:0007118 Xenbase:XB-Transgene-1234567890 20200619 Xenbase occurs_in(XAO:0004100) model-state=production|noctua-model-id=gomodel:5ed1aab700000170|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-Transgene-1234567890
  • Line 4728 – Xenbase XB-GENE-482015 acts_upstream_of_or_within GO:0048675 PMID:30612743 ECO:0007118 Xenbase:XB-Transgene-1234567890 20200619 Xenbase occurs_in(XAO:0004100) model-state=production|noctua-model-id=gomodel:5ed1aab700000170|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 4730 – Xenbase XB-GENE-483568 is_active_in GO:0005770 PMID:30612743 ECO:0007719 20200619 Xenbase part_of(XAO:0004100),part_of(XAO:0005015) model-state=production|noctua-model-id=gomodel:5ed1aab700000170|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 4840 – Xenbase XB-GENE-6486172 is_active_in GO:0097729 PMID:32482850 ECO:0005601 20200618 Xenbase part_of(XAO:0000028) model-state=production|contributor=https://orcid.org/0000-0001-5495-4588|noctua-model-id=gomodel:5ee8120100000340
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 4842 – Xenbase XB-GENE-6486172 located_in GO:0036064 PMID:32482850 ECO:0005804 20200618 Xenbase part_of(XAO:0005179) model-state=production|contributor=https://orcid.org/0000-0001-5495-4588|noctua-model-id=gomodel:5ee8120100000340
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 4849 – Xenbase XB-GENE-6486303 is_active_in GO:0005737 PMID:31813957 ECO:0001838 20200626 Xenbase part_of(XAO:0004069) noctua-model-id=gomodel:5ee8120100000466|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 5502 – Xenbase XB-GENE-856300 involved_in GO:1903251 PMID:31884020 ECO:0007089 xenbase:XB-sgRNA-cfap43 20200903 Xenbase model-state=production|noctua-model-id=gomodel:5f46c3b700000347|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: xenbase
  • Line 5791 – Xenbase XB-GENE-948357 is_active_in GO:0032433 PMID:32328641 ECO:0007726 20201012 Xenbase part_of(XAO:0000205) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:5f46c3b700002808
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 5942 – Xenbase XB-GENE-6252596 acts_upstream_of_or_within GO:0002777 PMID:30692997 ECO:0000304 20201104 Xenbase occurs_in(XAO:0005023) noctua-model-id=gomodel:5f46c3b700004207|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 5943 – Xenbase XB-GENE-6255524 acts_upstream_of_or_within GO:0002777 PMID:30692997 ECO:0000304 20201104 Xenbase occurs_in(XAO:0005023) noctua-model-id=gomodel:5f46c3b700004207|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 5944 – Xenbase XB-GENE-6254459 acts_upstream_of_or_within GO:0002777 PMID:30692997 ECO:0000304 20201104 Xenbase occurs_in(XAO:0005023) noctua-model-id=gomodel:5f46c3b700004207|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 5945 – Xenbase XB-GENE-6253058 acts_upstream_of_or_within GO:0002777 PMID:30692997 ECO:0000304 20201104 Xenbase occurs_in(XAO:0005023) noctua-model-id=gomodel:5f46c3b700004207|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 6141 – Xenbase XB-GENE-17336014 acts_upstream_of_or_within_positive_effect GO:0016477 PMID:28427856 ECO:0007752 20201119 Xenbase occurs_in(XAO:0001001) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:5fadbcf000000317
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 6157 – Xenbase XB-GENE-1217556 acts_upstream_of_or_within_positive_effect GO:0016477 PMID:28427856 ECO:0007752 20201119 Xenbase occurs_in(XAO:0001001) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:5fadbcf000000317
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 7156 – Xenbase XB-GENE-17343408 acts_upstream_of_or_within GO:0120221 PMID:3504787 ECO:0000315 XB:XB-MORPHOLINO-23622456 20260316 Xenbase noctua-model-id=gomodel:600ced8500001415|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XB
  • Line 7157 – Xenbase XB-GENE-5752726 part_of GO:0031514 PMID:33504787 ECO:0001249 20210210 Xenbase part_of(XAO:0005179) noctua-model-id=gomodel:600ced8500001415|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 7272 – Xenbase XB-GENE-866134 acts_upstream_of_or_within GO:0048730 PMID:30935896 ECO:0005667 Xenbase:XB-GRNA-23659180 20260127 Xenbase model-state=production|noctua-model-id=gomodel:60418ffa00000241|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-23659180
  • Line 7686 – Xenbase XB-GENE-5823109 acts_upstream_of_or_within GO:0060271 PMID:27593162 ECO:0006051 XENBASE:XB-MORPHOLINO-18328518 20210326 Xenbase noctua-model-id=gomodel:60418ffa00001706|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 7943 – Xenbase XB-GENE-5865835 acts_upstream_of_or_within GO:0060324 PMID:33819264 ECO:0006051 Xenbase:XB-MORPHOLINO-XB-MORPHOLINO-23622626 20210428 Xenbase model-state=production|contributor=https://orcid.org/0000-0002-6238-1932|noctua-model-id=gomodel:60897d8500000066
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-MORPHOLINO-XB-MORPHOLINO-23622626
  • Line 7944 – Xenbase XB-GENE-5865835 acts_upstream_of_or_within GO:0030900 PMID:33819264 ECO:0006051 Xenbase:XB-MORPHOLINO-XB-MORPHOLINO-23622626 20210428 Xenbase model-state=production|contributor=https://orcid.org/0000-0002-6238-1932|noctua-model-id=gomodel:60897d8500000066
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-MORPHOLINO-XB-MORPHOLINO-23622626
  • Line 7945 – Xenbase XB-GENE-5865835 acts_upstream_of_or_within GO:0030901 PMID:33819264 ECO:0006051 Xenbase:XB-MORPHOLINO-XB-MORPHOLINO-23622626 20210428 Xenbase model-state=production|contributor=https://orcid.org/0000-0002-6238-1932|noctua-model-id=gomodel:60897d8500000066
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-MORPHOLINO-XB-MORPHOLINO-23622626
  • Line 10493 – Xenbase XB-GENE-854081 acts_upstream_of_or_within_positive_effect GO:0021515 PMID:34427977 ECO:0000315 Xenbase:XB-gRNA-23659618 20210827 Xenbase part_of(GO:0097719),occurs_in(XAO:0003026) noctua-model-id=gomodel:61283a3000000016|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-23659618
  • Line 10495 – Xenbase XB-GENE-1005792 acts_upstream_of_or_within GO:0007420 PMID:32053595 ECO:0000315 XENBASE:XB-MORPHOLINO-22194337 20210827 Xenbase model-state=production|noctua-model-id=gomodel:61283a3000000034|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 10499 – Xenbase XB-GENE-17335642 acts_upstream_of_or_within GO:0007420 PMID:32053595 ECO:0000315 XENBASE:XB-MORPHOLINO-22194338 20210827 Xenbase model-state=production|noctua-model-id=gomodel:61283a3000000034|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 10553 – Xenbase XB-GENE-6487461 acts_upstream_of_or_within GO:0060271 PMID:26538025 ECO:0000315 XENBASE:XB-MORPHOLINO-18290399 20210903 Xenbase noctua-model-id=gomodel:61283a3000000537|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 10563 – Xenbase XB-GENE-6486303 acts_upstream_of_or_within GO:0007507 PMID:30980591 ECO:0000315 XENBASE:XB-MORPHOLINO-XB-MORPHOLINO-22064432 20210908 Xenbase noctua-model-id=gomodel:61283a3000000688|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 11368 – Xenbase XB-GENE-17340923 acts_upstream_of_or_within GO:0061966 PMID:34531379 ECO:0006051 XENBASE:XB-MORPHOLINO-23659724XENBASE:XB-MORPHOLINO-23659726 20211028 Xenbase noctua-model-id=gomodel:6168d1e000001555|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 11369 – Xenbase XB-GENE-865412 acts_upstream_of_or_within GO:0061966 PMID:34531379 ECO:0006051 XENBASE:XB-MORPHOLINO-23659725XENBASE:XB-MORPHOLINO-23659727 20211028 Xenbase noctua-model-id=gomodel:6168d1e000001555|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 11370 – Xenbase XB-GENE-17331064 acts_upstream_of_or_within GO:0061966 PMID:34531379 ECO:0006051 XENBASE:XB-MORPHOLINO-17249380XENBASE:XB-MORPHOLINO-23659731 20211028 Xenbase noctua-model-id=gomodel:6168d1e000001555|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 11371 – Xenbase XB-GENE-6251921 acts_upstream_of_or_within GO:0061966 PMID:34531379 ECO:0006051 XENBASE:XB-MORPHOLINO-23659729XENBASE:XB-MORPHOLINO-17249193 20211028 Xenbase noctua-model-id=gomodel:6168d1e000001555|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 11372 – Xenbase XB-GENE-865790 acts_upstream_of_or_within GO:0061966 PMID:34531379 ECO:0006051 XENBASE:XB-MORPHOLINO-17249194XENBASE:XB-MORPHOLINO-23659728 20211028 Xenbase noctua-model-id=gomodel:6168d1e000001555|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 11373 – Xenbase XB-GENE-17343554 acts_upstream_of_or_within GO:0061966 PMID:34531379 ECO:0006051 XENBASE:XB-MORPHOLINO-17249622 20211028 Xenbase noctua-model-id=gomodel:6168d1e000001555|model-state=production|contributor=https://orcid.org/0000-0002-6238-1932
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 12963 – Xenbase XB-GENE-480717 acts_upstream_of_or_within GO:1904888 PMID:34664392 ECO:0007089 XENBASE:XB-gRNA-23659462;XB-gRNA-25874518 20220106 Xenbase part_of(GO:0071599) noctua-model-id=gomodel:61bcf0b700000339|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 13114 – Xenbase XB-GENE-919827 acts_upstream_of_or_within GO:0048856 PMID:32196547 ECO:0000315 20220118 Xenbase results_in_development_of(XAO:0003029) model-state=production|noctua-model-id=gomodel:61e0e55600000483|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 13116 – Xenbase XB-GENE-6487832 acts_upstream_of_or_within GO:0060296 PMID:32376681 ECO:0000315 20220118 Xenbase occurs_in(XAO:0005179) model-state=production|noctua-model-id=gomodel:61e0e55600000507|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 13118 – Xenbase XB-GENE-6487832 is_active_in GO:0005929 PMID:32376681 ECO:0000315 20220118 Xenbase part_of(XAO:0005179) model-state=production|noctua-model-id=gomodel:61e0e55600000507|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 16239 – Xenbase XB-GENE-17340954 acts_upstream_of_or_within_negative_effect GO:0012501 PMID:17010201 ECO:0006051 Xenbase:XB-MORPHOLINO-17249623 20220524 Xenbase occurs_in(XAO:0005034) noctua-model-id=gomodel:627d95ee00001534|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 16563 – Xenbase XB-GENE-6253809 acts_upstream_of_or_within_positive_effect GO:0001843 PMID:33500317 ECO:0005667 Xenbase:XB-gRNA-25875083 20220613 Xenbase noctua-model-id=gomodel:62900b6400001132|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-25875083
  • Line 16565 – Xenbase XB-GENE-6253809 acts_upstream_of_or_within_positive_effect GO:0021504 PMID:33500317 ECO:0005667 Xenbase:XB-gRNA-25875083 20220613 Xenbase part_of(GO:0001843) noctua-model-id=gomodel:62900b6400001132|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-25875083
  • Line 16568 – Xenbase XB-GENE-6253809 acts_upstream_of_or_within_positive_effect GO:0003383 PMID:33500317 ECO:0005667 Xenbase:XB-gRNA-25875083 20220613 Xenbase part_of(GO:0001843),part_of(GO:0021504) noctua-model-id=gomodel:62900b6400001132|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-25875083
  • Line 17029 – Xenbase XB-GENE-6489065 involved_in GO:1904888 PMID:34414417 ECO:0000315 Xenbase:XB-gRNA-23659615 20220628 Xenbase noctua-model-id=gomodel:62b4ffe300001099|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-23659615
  • Line 17033 – Xenbase XB-GENE-6489065 acts_upstream_of_or_within GO:0030916 PMID:34414417 ECO:0000315 Xenbase:XB-gRNA-23659615 20220628 Xenbase part_of(GO:1904888) noctua-model-id=gomodel:62b4ffe300001099|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-23659615
  • Line 17034 – Xenbase XB-GENE-6489065 acts_upstream_of_or_within GO:0060037 PMID:34414417 ECO:0000315 Xenbase:XB-gRNA-23659615 20220628 Xenbase part_of(GO:1904888) noctua-model-id=gomodel:62b4ffe300001099|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-23659615
  • Line 21368 – Xenbase XB-GENE-992888 involved_in GO:0002138 PMID:35372345 ECO:0001808 20221104 Xenbase occurs_in(XAO:0000072) model-state=production|noctua-model-id=gomodel:635b1e3e00001115|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 21371 – Xenbase XB-GENE-992888 acts_upstream_of_or_within_positive_effect GO:0002138 PMID:35372345 ECO:0000315 Xenbase:XB-gRNA-25900592 20221104 Xenbase occurs_in(XAO:0000072) model-state=production|noctua-model-id=gomodel:635b1e3e00001115|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-25900592
  • Line 21371 – Xenbase XB-GENE-992888 acts_upstream_of_or_within_positive_effect GO:0002138 PMID:35372345 ECO:0000315 Xenbase:XB-gRNA-25900592 20221104 Xenbase occurs_in(XAO:0000072) model-state=production|noctua-model-id=gomodel:635b1e3e00001115|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 21372 – Xenbase XB-GENE-1012914 acts_upstream_of_or_within_positive_effect GO:0009948 PMID:35372345 ECO:0000315 Xenbase:XB-gRNA-25900591 20221104 Xenbase model-state=production|noctua-model-id=gomodel:635b1e3e00001115|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-25900591
  • Line 21377 – Xenbase XB-GENE-992888 acts_upstream_of_or_within_positive_effect GO:0002138 PMID:35372345 ECO:0000315 Xenbase:XB-gRNA-25900592 20221104 Xenbase occurs_in(UBERON:0034878) model-state=production|noctua-model-id=gomodel:635b1e3e00001115|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-25900592
  • Line 21378 – Xenbase XB-GENE-992888 acts_upstream_of_or_within_positive_effect GO:0002138 PMID:35372345 ECO:0006051 Xenbase:XB-MORPHOLINO-25900384 20221104 Xenbase occurs_in(XAO:0000072) model-state=production|noctua-model-id=gomodel:635b1e3e00001115|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 21380 – Xenbase XB-GENE-992888 involved_in GO:0002138 PMID:35372345 ECO:0000304 20221104 Xenbase occurs_in(XAO:0000072) model-state=production|noctua-model-id=gomodel:635b1e3e00001115|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 21553 – Xenbase XB-GENE-6251832 acts_upstream_of_or_within_positive_effect GO:0048666 PMID:33020520 ECO:0000315 Xenbase:XB-MORPHOLINO-25900595 20221109 Xenbase occurs_in(XAO:0004217) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:635b1e3e00002235
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 21555 – Xenbase XB-GENE-865846 acts_upstream_of_or_within_negative_effect GO:0048666 PMID:33020520 ECO:0000315 Xenbase:XB-MORPHOLINO-25900595 20221109 Xenbase occurs_in(XAO:0004217) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:635b1e3e00002235
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 21556 – Xenbase XB-GENE-865922 acts_upstream_of_or_within_negative_effect GO:0030032 PMID:33020520 ECO:0000315 Xenbase:XB-MORPHOLINO-25900594 20221109 Xenbase occurs_in(XAO:0004217) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:635b1e3e00002235
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 21557 – Xenbase XB-GENE-489012 acts_upstream_of_or_within_negative_effect GO:0048666 PMID:33020520 ECO:0000315 Xenbase:XB-MORPHOLINO-25900595 20221109 Xenbase occurs_in(XAO:0004217) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:635b1e3e00002235
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 21558 – Xenbase XB-GENE-865922 acts_upstream_of_or_within GO:0048666 PMID:33020520 ECO:0000315 Xenbase:XB-MORPHOLINO-25900595 20221109 Xenbase occurs_in(XAO:0004217) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:635b1e3e00002235
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 21559 – Xenbase XB-GENE-865922 acts_upstream_of_or_within_negative_effect GO:0030032 PMID:33020520 ECO:0000315 Xenbase:XB-MORPHOLINO-25900595 20221109 Xenbase occurs_in(XAO:0004217) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:635b1e3e00002235
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 23526 – Xenbase XB-GENE-959274 enables GO:0015026 PMID:36572140 ECO:0007089 Xenbase:XB-gRNA-25919051 20231219 Xenbase part_of(GO:0060070),occurs_in(GO:0005829),has_input(Xenbase:XB-GENE-487200),has_input(Xenbase:XB-GENE-6258173) noctua-model-id=gomodel:63d320cd00001072|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-25919051
  • Line 23527 – Xenbase XB-GENE-959274 involved_in GO:0060070 PMID:36572140 ECO:0007089 Xenbase:XB-gRNA-25919051 20231219 Xenbase noctua-model-id=gomodel:63d320cd00001072|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-25919051
  • Line 23528 – Xenbase XB-GENE-959274 acts_upstream_of_or_within GO:0007507 PMID:36572140 ECO:0007089 Xenbase:XB-gRNA-25919051 20231219 Xenbase part_of(GO:0060061),part_of(GO:0061371) noctua-model-id=gomodel:63d320cd00001072|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-gRNA-25919051
  • Line 30510 – Xenbase XB-GENE-17337584 acts_upstream_of_or_within GO:0001654 PMID:28501477 ECO:0000315 Xenbase:XB-GRNA-29209218 20251201 Xenbase model-state=production|noctua-model-id=gomodel:65692e7e00001353|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29209218
  • Line 30511 – Xenbase XB-GENE-864947 acts_upstream_of_or_within GO:0001654 PMID:28501477 ECO:0000315 Xenbase:XB-GRNA-29209219 20251201 Xenbase model-state=production|noctua-model-id=gomodel:65692e7e00001353|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29209219
  • Line 30526 – Xenbase XB-GENE-17338659 acts_upstream_of_or_within GO:0061036 PMID:36116039 ECO:0000315 Xenbase:XB-MORPHOLINO-29208251 20231211 Xenbase occurs_in(XAO:0000040) noctua-model-id=gomodel:65692e7e00001457|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 30533 – Xenbase XB-GENE-865008 acts_upstream_of_or_within GO:0016055 PMID:25446030 ECO:0000315 Xenbase:XB-MORPHOLINO-17251697 20231212 Xenbase occurs_in(XAO:0000276) noctua-model-id=gomodel:65692e7e00001523|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XAO
  • Line 30728 – Xenbase XB-GENE-6486473 acts_upstream_of_or_within GO:0048557 PMID:38152138 ECO:0000315 XENBASE:XB-GRNA-29209332 20240103 Xenbase model-state=production|noctua-model-id=gomodel:657ba49f00000796|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 32900 – Xenbase XB-GENE-6254887 enables GO:0141147 PMID:38388461 ECO:0007089 Xenbase:XB-MORPHOLINO-18375548; 20240322 Xenbase part_of(GO:0001843),part_of(GO:0021505) model-state=production|noctua-model-id=gomodel:65f3ae5c00000062|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-MORPHOLINO-18375548;
  • Line 32901 – Xenbase XB-GENE-6254887 involved_in GO:0001843 PMID:38388461 ECO:0007089 Xenbase:XB-MORPHOLINO-18375548; 20240322 Xenbase model-state=production|noctua-model-id=gomodel:65f3ae5c00000062|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-MORPHOLINO-18375548;
  • Line 32902 – Xenbase XB-GENE-6254887 involved_in GO:0021505 PMID:38388461 ECO:0007089 Xenbase:XB-MORPHOLINO-18375548; 20240322 Xenbase part_of(GO:0001843) model-state=production|noctua-model-id=gomodel:65f3ae5c00000062|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-MORPHOLINO-18375548;
  • Line 36988 – Xenbase XB-GENE-17333851 acts_upstream_of_or_within GO:0055010 PMID:38501224 ECO:0007089 Xenbase:XB-MORPHOLINO-22249065;Xenbase:XB-MORPHOLINO-29212937 20240620 Xenbase part_of(GO:0007507) model-state=production|noctua-model-id=gomodel:666b894f00001795|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-MORPHOLINO-22249065;Xenbase:XB-MORPHOLINO-29212937
  • Line 37102 – Xenbase XB-GENE-17330203 acts_upstream_of_or_within GO:0120221 PMID:30665704 ECO:0007089 Xenbase:XB-MORPHOLINO-29212947;Xenbase:XB-MORPHOLINO-29212948 20240627 Xenbase occurs_in(GO:0005929),occurs_in(XAO:0005179) model-state=production|noctua-model-id=gomodel:666b894f00002553|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-MORPHOLINO-29212947;Xenbase:XB-MORPHOLINO-29212948
  • Line 47416 – Xenbase XB-GENE-487270 acts_upstream_of_or_within GO:0048484 PMID:40050271 ECO:0007089 XENBASE:XB-GRNA-29212865 20250325 Xenbase model-state=production|noctua-model-id=gomodel:67c10cc400008583|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 49509 – Xenbase XB-GENE-6488358 involved_in GO:0060322 PMID:30209221 ECO:0007089 xenbase:XB-MORPHOLINO-22041482 20250514 Xenbase model-state=production|noctua-model-id=gomodel:680ad14200004756|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: xenbase
  • Line 58795 – Xenbase XB-GENE-988112 enables GO:0045296 PMID:18946084 ECO:0006051 XB-MORPHOLINO-17249119:adam13MO3 20260106 Xenbase noctua-model-id=gomodel:693b3c0900005556|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XB-MORPHOLINO-17249119
  • Line 58798 – Xenbase XB-GENE-988112 involved_in GO:0016477 PMID:21316592 ECO:0006051 XB-MORPHOLINO-17249119:adam13MO3 20260106 Xenbase noctua-model-id=gomodel:693b3c0900005556|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XB-MORPHOLINO-17249119
  • Line 58830 – Xenbase XB-GENE-6251704 acts_upstream_of_or_within GO:0001654 PMID:39083515 ECO:0006051 XENBASE:XB-MORPHOLINO-29231101 20260106 Xenbase noctua-model-id=gomodel:693b3c0900005792|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: XENBASE
  • Line 58945 – Xenbase XB-GENE-6251919 is_active_in GO:0000922 PMID:PMC2175143 ECO:0001189 20260112 Xenbase model-state=production|contributor=https://orcid.org/0000-0001-5495-4588|noctua-model-id=gomodel:696022cd00000762
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for PMID:PMC2175143
  • Line 58946 – Xenbase XB-GENE-6251919 involved_in GO:0007051 PMID:PMC2175143 ECO:0001189 20260112 Xenbase part_of(GO:0070286),occurs_in(GO:0000922) model-state=production|contributor=https://orcid.org/0000-0001-5495-4588|noctua-model-id=gomodel:696022cd00000762
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for PMID:PMC2175143
  • Line 58947 – Xenbase XB-GENE-6251919 involved_in GO:0070286 PMID:PMC2175143 ECO:0001189 20260112 Xenbase model-state=production|contributor=https://orcid.org/0000-0001-5495-4588|noctua-model-id=gomodel:696022cd00000762
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for PMID:PMC2175143
  • Line 62730 – Xenbase XB-GENE-6487215 acts_upstream_of_or_within GO:0003140 PMID:41758249 ECO:0007089 Xenbase:XB-MORPHOLINO-29231288|Xenbase:XB-GRNA-29231289|Xenbase:XB-GRNA-29231290 20260410 Xenbase noctua-model-id=gomodel:69d8496c00000535|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29231289
  • Line 62730 – Xenbase XB-GENE-6487215 acts_upstream_of_or_within GO:0003140 PMID:41758249 ECO:0007089 Xenbase:XB-MORPHOLINO-29231288|Xenbase:XB-GRNA-29231289|Xenbase:XB-GRNA-29231290 20260410 Xenbase noctua-model-id=gomodel:69d8496c00000535|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29231290
  • Line 62731 – Xenbase XB-GENE-6487215 acts_upstream_of_or_within GO:0001947 PMID:41758249 ECO:0007089 Xenbase:XB-MORPHOLINO-29231288|Xenbase:XB-GRNA-29231289|Xenbase:XB-GRNA-29231290 20260410 Xenbase noctua-model-id=gomodel:69d8496c00000535|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29231289
  • Line 62731 – Xenbase XB-GENE-6487215 acts_upstream_of_or_within GO:0001947 PMID:41758249 ECO:0007089 Xenbase:XB-MORPHOLINO-29231288|Xenbase:XB-GRNA-29231289|Xenbase:XB-GRNA-29231290 20260410 Xenbase noctua-model-id=gomodel:69d8496c00000535|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29231290
  • Line 62732 – Xenbase XB-GENE-6487215 acts_upstream_of_or_within GO:0060287 PMID:41758249 ECO:0007089 Xenbase:XB-MORPHOLINO-29231288|Xenbase:XB-GRNA-29231289|Xenbase:XB-GRNA-29231290 20260410 Xenbase noctua-model-id=gomodel:69d8496c00000535|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29231289
  • Line 62732 – Xenbase XB-GENE-6487215 acts_upstream_of_or_within GO:0060287 PMID:41758249 ECO:0007089 Xenbase:XB-MORPHOLINO-29231288|Xenbase:XB-GRNA-29231289|Xenbase:XB-GRNA-29231290 20260410 Xenbase noctua-model-id=gomodel:69d8496c00000535|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29231290
  • Line 62733 – Xenbase XB-GENE-6487215 acts_upstream_of_or_within GO:0060972 PMID:41758249 ECO:0007089 Xenbase:XB-MORPHOLINO-29231288|Xenbase:XB-GRNA-29231289|Xenbase:XB-GRNA-29231290 20260410 Xenbase noctua-model-id=gomodel:69d8496c00000535|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29231289
  • Line 62733 – Xenbase XB-GENE-6487215 acts_upstream_of_or_within GO:0060972 PMID:41758249 ECO:0007089 Xenbase:XB-MORPHOLINO-29231288|Xenbase:XB-GRNA-29231289|Xenbase:XB-GRNA-29231290 20260410 Xenbase noctua-model-id=gomodel:69d8496c00000535|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29231290
  • Line 62734 – Xenbase XB-GENE-6487215 acts_upstream_of_or_within GO:0061966 PMID:41758249 ECO:0007089 Xenbase:XB-MORPHOLINO-29231288|Xenbase:XB-GRNA-29231289|Xenbase:XB-GRNA-29231290 20260410 Xenbase noctua-model-id=gomodel:69d8496c00000535|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29231289
  • Line 62734 – Xenbase XB-GENE-6487215 acts_upstream_of_or_within GO:0061966 PMID:41758249 ECO:0007089 Xenbase:XB-MORPHOLINO-29231288|Xenbase:XB-GRNA-29231289|Xenbase:XB-GRNA-29231290 20260410 Xenbase noctua-model-id=gomodel:69d8496c00000535|model-state=production|contributor=https://orcid.org/0000-0001-5495-4588
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for Xenbase:XB-GRNA-29231290

✅ GORULE:0000030-Obsolete GO_REFs are not allowed

  • All checks passed - 0 violations

✅ GORULE:0000033-Group-specific Reference IDs are not allowed, only public reference IDs (PMID, doi, or GO_REF)

  • All checks passed - 0 violations

✅ GORULE:0000039-Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

  • All checks passed - 0 violations

✅ GORULE:0000042-Qualifier: IKR evidence code requires a NOT qualifier

  • All checks passed - 0 violations

✅ GORULE:0000043-Check for valid combination of evidence code and GO_REF

  • All checks passed - 0 violations

✅ GORULE:0000046-The 'with' field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to 'self-binding' terms.

  • All checks passed - 0 violations

✅ GORULE:0000050-Annotations to ISS, ISA and ISO should not be self-referential

  • All checks passed - 0 violations

✅ GORULE:0000053-'NOT' annotation should not have extension

  • All checks passed - 0 violations

✅ GORULE:0000055-References should have only one ID per ID space

  • All checks passed - 0 violations

✅ GORULE:0000063-Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

  • All checks passed - 0 violations

⚠️ GORULE:0000065-Term candidate for obsoletion

  • Total Violations: 6
  • Line 781 – Xenbase XB-GENE-483735 acts_upstream_of_or_within GO:0007258 PMID:16026968 ECO:0006063 20190411 Xenbase noctua-model-id=gomodel:5a7e68a100000628|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0007258
  • Line 784 – Xenbase XB-GENE-17340943 acts_upstream_of_or_within GO:0007258 PMID:16026968 ECO:0006063 20181026 Xenbase noctua-model-id=gomodel:5a7e68a100000628|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0007258
  • Line 13114 – Xenbase XB-GENE-919827 acts_upstream_of_or_within GO:0048856 PMID:32196547 ECO:0000315 20220118 Xenbase results_in_development_of(XAO:0003029) model-state=production|noctua-model-id=gomodel:61e0e55600000483|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0048856
  • Line 16562 – Xenbase XB-GENE-487200 enables GO:0008134 PMID:32894225 ECO:0006051 Xenbase:XB-MORPHOLINO-17249330 20220613 Xenbase part_of(GO:1904837) noctua-model-id=gomodel:62900b6400001096|model-state=production|contributor=https://orcid.org/0000-0003-1074-8103
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0008134
  • Line 16693 – Xenbase XB-GENE-6488002 acts_upstream_of_or_within_negative_effect GO:0006468 PMID:32859582 ECO:0000314 20230711 Xenbase has_input(Xenbase:XB-GENE-17332607) model-state=production|contributor=https://orcid.org/0000-0003-1074-8103|noctua-model-id=gomodel:62900b6400002070
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0006468
  • Line 31865 –
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0007093