GORULE Violations Assigned by SynGO|SynGO-VU

_{Generated by GOA at - 2026-07-25 08:06:14.434684}

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Rule	Description	Count
✅GORULE:0000001	GAF lines are parsed according to GAF 2.2 specifications	0
✅GORULE:0000002	No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'	0
✅GORULE:0000005	IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to protein binding ; GO:0005515 or GO:0005488 binding	0
✅GORULE:0000006	IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC	0
✅GORULE:0000007	IPI should not be used with GO:0003824 catalytic activity or descendants	0
✅GORULE:0000008	No annotations should be made to uninformative high level terms	0
✅GORULE:0000011	ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND	0
✅GORULE:0000013	Taxon-appropriate annotation check	0
✅GORULE:0000015	Dual species taxon check	0
✅GORULE:0000016	With/From: IC annotations require a With/From GO ID	0
✅GORULE:0000017	IDA annotations must not have a With/From entry	0
✅GORULE:0000018	IPI annotations require a With/From entry	0
✅GORULE:0000020	Automatic repair of annotations to merged or obsoleted terms	0
✅GORULE:0000022	Check for, and filter, annotations made to retracted publications	0
✅GORULE:0000027	Each identifier in GAF is valid	0
✅GORULE:0000030	Obsolete GO_REFs are not allowed	0
✅GORULE:0000033	Group-specific Reference IDs are not allowed, only public reference IDs (PMID, doi, or GO_REF)	0
✅GORULE:0000039	Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants	0
✅GORULE:0000042	Qualifier: IKR evidence code requires a NOT qualifier	0
✅GORULE:0000043	Check for valid combination of evidence code and GO_REF	0
✅GORULE:0000046	The 'with' field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to 'self-binding' terms.	0
✅GORULE:0000050	Annotations to ISS, ISA and ISO should not be self-referential	0
✅GORULE:0000053	'NOT' annotation should not have extension	0
✅GORULE:0000055	References should have only one ID per ID space	0
✅GORULE:0000063	Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)	0
✅GORULE:0000065	Term candidate for obsoletion	0