GORULE Violations Assigned by PomBase

Generated by GOA at EMBL-EBI logo - 2026-07-25 08:03:00.301737

Total Lines

339896

PomBase

6403

Valid Lines

6288 (98.2%)

Total Problems Detected

115

File Header

!gpa-version: 1.2
!collation date: 2026-07-22
RuleDescriptionCount
✅GORULE:0000001 GAF lines are parsed according to GAF 2.2 specifications 0
✅GORULE:0000002 No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515' 0
✅GORULE:0000005 IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to protein binding ; GO:0005515 or GO:0005488 binding 0
✅GORULE:0000006 IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC 0
✅GORULE:0000007 IPI should not be used with GO:0003824 catalytic activity or descendants 0
⛔️GORULE:0000008 No annotations should be made to uninformative high level terms 4
⛔️GORULE:0000011 ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND 98
✅GORULE:0000013 Taxon-appropriate annotation check 0
✅GORULE:0000015 Dual species taxon check 0
✅GORULE:0000016 With/From: IC annotations require a With/From GO ID 0
✅GORULE:0000017 IDA annotations must not have a With/From entry 0
✅GORULE:0000018 IPI annotations require a With/From entry 0
✅GORULE:0000020 Automatic repair of annotations to merged or obsoleted terms 0
✅GORULE:0000022 Check for, and filter, annotations made to retracted publications 0
⛔️GORULE:0000027 Each identifier in GAF is valid 13
✅GORULE:0000030 Obsolete GO_REFs are not allowed 0
✅GORULE:0000033 Group-specific Reference IDs are not allowed, only public reference IDs (PMID, doi, or GO_REF) 0
✅GORULE:0000039 Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants 0
✅GORULE:0000042 Qualifier: IKR evidence code requires a NOT qualifier 0
✅GORULE:0000043 Check for valid combination of evidence code and GO_REF 0
✅GORULE:0000046 The 'with' field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to 'self-binding' terms. 0
✅GORULE:0000050 Annotations to ISS, ISA and ISO should not be self-referential 0
✅GORULE:0000053 'NOT' annotation should not have extension 0
✅GORULE:0000055 References should have only one ID per ID space 0
✅GORULE:0000063 Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column) 0
⚠️GORULE:0000065 Term candidate for obsoletion 11

Messages

✅ GORULE:0000001-GAF lines are parsed according to GAF 2.2 specifications

  • All checks passed - 0 violations

✅ GORULE:0000002-No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

  • All checks passed - 0 violations

✅ GORULE:0000005-IEA, ISS, ISO, ISM, ISA, IBA, RCA annotations are not allowed for direct annotations to protein binding ; GO:0005515 or GO:0005488 binding

  • All checks passed - 0 violations

✅ GORULE:0000006-IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

  • All checks passed - 0 violations

✅ GORULE:0000007-IPI should not be used with GO:0003824 catalytic activity or descendants

  • All checks passed - 0 violations

⛔️ GORULE:0000008-No annotations should be made to uninformative high level terms

  • Total Violations: 4
  • Line 34720 – PomBase SPAC19G12.11 enables GO:0098772 PMID:38425362 ECO:0000304 20241126 PomBase directly_positively_regulates(GO:0160224) noctua-model-id=gomodel:662af8fa00000408|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000008-No annotations should be made to uninformative high level terms
  • Line 35925 – PomBase SPAC167.09 enables GO:0098772 GO_REF:0000033 ECO:0000318 PANTHER:PTN001997630|SGD:S000005102 20240601 PomBase part_of(GO:0006506),occurs_in(GO:0005789),directly_positively_regulates(GO:0120563) noctua-model-id=gomodel:665912ed00000192|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000008-No annotations should be made to uninformative high level terms
  • Line 46509 – PomBase SPBC17G9.11c involved_in GO:0006090 GO_REF:0000033 ECO:0000318 PANTHER:PTN001821692|RGD:3262 20250328 PomBase noctua-model-id=gomodel:67c10cc400002026|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000008-No annotations should be made to uninformative high level terms
  • Line 48806 – PomBase SPAC27F1.02c enables GO:0098772 PMID:12796476 ECO:0000314 20250418 PomBase noctua-model-id=gomodel:67f85f2b00002096|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000008-No annotations should be made to uninformative high level terms

⛔️ GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

  • Total Violations: 98
  • Line 34591 – PomBase SPBC215.04 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260318 PomBase noctua-model-id=gomodel:66187e4700003150|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 34612 – PomBase SPBC21C3.20c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250609 PomBase noctua-model-id=gomodel:66187e4700003150|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 34707 – PomBase SPCC1840.09 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250320 PomBase noctua-model-id=gomodel:662af8fa00000408|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 35305 – PomBase SPBC26H8.16 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250721 PomBase noctua-model-id=gomodel:663d668500000596|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 35631 – PomBase SPAC637.04 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260406 PomBase directly_positively_regulates(GO:0004430) model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:663d668500002178
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 35922 – PomBase SPAC1002.11 enables GO:0003674 GO_REF:0000015 ECO:0000307 20240812 PomBase directly_positively_regulates(GO:0003923) noctua-model-id=gomodel:665912ed00000192|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 35934 – PomBase SPAC1952.01 enables GO:0003674 GO_REF:0000015 ECO:0000307 20240812 PomBase noctua-model-id=gomodel:665912ed00000192|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 35940 – PomBase SPAC589.12 enables GO:0003674 GO_REF:0000015 ECO:0000307 20240602 PomBase noctua-model-id=gomodel:665912ed00000192|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 35991 – PomBase SPBC1604.15 enables GO:0003674 GO_REF:0000015 ECO:0000307 20240904 PomBase noctua-model-id=gomodel:665912ed00000192|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 36019 – PomBase SPAC1F12.09 enables GO:0003674 GO_REF:0000015 ECO:0000307 20240904 PomBase noctua-model-id=gomodel:665912ed00000192|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 36370 – PomBase SPAC17A2.13c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260325 PomBase noctua-model-id=gomodel:665912ed00001983|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 36414 – PomBase SPAC4H3.06 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260325 PomBase noctua-model-id=gomodel:665912ed00001983|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 37461 – PomBase SPBC13G1.06c enables GO:0003674 GO_REF:0000015 ECO:0000307 20240715 PomBase noctua-model-id=gomodel:6690711d00000331|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 37520 – PomBase SPCC4B3.11c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250623 PomBase noctua-model-id=gomodel:6690711d00000331|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 37527 – PomBase SPAC4H3.09 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260427 PomBase noctua-model-id=gomodel:6690711d00000331|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 37548 – PomBase SPBC16E9.06c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250623 PomBase noctua-model-id=gomodel:6690711d00000331|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 39412 – PomBase SPAP14E8.05c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250313 PomBase has_input(CHEBI:57307) noctua-model-id=gomodel:66c7d41500000841|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 39473 – PomBase SPBC17A3.02 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250313 PomBase noctua-model-id=gomodel:66c7d41500000841|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 41324 – PomBase SPBP22H7.04 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260117 PomBase model-state=production|noctua-model-id=gomodel:67086be200000519|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 41351 – PomBase SPAC25B8.04c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250427 PomBase model-state=production|noctua-model-id=gomodel:67086be200000519|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 41542 – PomBase SPBC36B7.02 enables GO:0003674 GO_REF:0000015 ECO:0000307 20241023 PomBase model-state=production|noctua-model-id=gomodel:67086be200002266|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 44833 – PomBase SPAC31G5.06 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250523 PomBase noctua-model-id=gomodel:6796b94c00002575|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48318 – PomBase SPBC16A3.16 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250421 PomBase noctua-model-id=gomodel:67e5e74400003073|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48319 – PomBase SPBC3H7.08c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250617 PomBase noctua-model-id=gomodel:67e5e74400003073|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48321 – PomBase SPAC15A10.17 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250421 PomBase noctua-model-id=gomodel:67e5e74400003073|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48324 – PomBase SPCC550.01c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250424 PomBase noctua-model-id=gomodel:67e5e74400003073|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48326 – PomBase SPCC757.15 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250424 PomBase noctua-model-id=gomodel:67e5e74400003073|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48339 – PomBase SPAC25B8.04c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250421 PomBase noctua-model-id=gomodel:67e5e74400003073|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48356 – PomBase SPAC25B8.07c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250421 PomBase noctua-model-id=gomodel:67e5e74400003073|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48364 – PomBase SPAC1B3.21 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250421 PomBase noctua-model-id=gomodel:67e5e74400003073|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48493 – PomBase SPCC18.13 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250410 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:67e5e74400004366
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48664 – PomBase SPBC16E9.19 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260417 PomBase noctua-model-id=gomodel:67f85f2b00001360|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48830 – PomBase SPAC926.10 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250421 PomBase model-state=production|noctua-model-id=gomodel:67f85f2b00002506|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48835 – PomBase SPAC1834.10c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260117 PomBase model-state=production|noctua-model-id=gomodel:67f85f2b00002506|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48843 – PomBase SPBC3B8.10 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250421 PomBase model-state=production|noctua-model-id=gomodel:67f85f2b00002506|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48845 – PomBase SPAC1486.11 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250421 PomBase model-state=production|noctua-model-id=gomodel:67f85f2b00002506|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48938 – PomBase SPBP23A10.03c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250422 PomBase noctua-model-id=gomodel:67f85f2b00003383|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 48940 – PomBase SPBC26H8.16 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250422 PomBase noctua-model-id=gomodel:67f85f2b00003383|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 50410 – PomBase SPAC823.13c enables GO:0003674 GO_REF:0000015 ECO:0000307 20250606 PomBase model-state=production|noctua-model-id=gomodel:682fbcd000005519|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 50540 – PomBase SPAC1610.04 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250611 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:682fbcd000006558
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 50547 – PomBase SPCC63.03 enables GO:0003674 GO_REF:0000015 ECO:0000307 20250611 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:682fbcd000006558
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 50549 – PomBase SPAC1782.06c enables GO:0003674 GO_REF:0000015 ECO:0000307 20251220 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:682fbcd000006558
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 50551 – PomBase SPBC16G5.07c enables GO:0003674 GO_REF:0000015 ECO:0000307 20251220 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:682fbcd000006558
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 53937 – PomBase SPBC30B4.06c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260417 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:689e7a5d00000756
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 54207 – PomBase SPAC2F3.13c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260417 PomBase directly_positively_regulates(GO:0008479) model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:689e7a5d00003050
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 57606 – PomBase SPAC1F5.05c enables GO:0003674 GO_REF:0000015 ECO:0000307 20251206 PomBase directly_negatively_regulates(GO:0005484) noctua-model-id=gomodel:6918f23700003787|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 57648 – PomBase SPAC8E11.05c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260526 PomBase noctua-model-id=gomodel:6918f23700003984|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 57655 – PomBase SPBC27B12.08 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260523 PomBase directly_positively_regulates(GO:0035615) noctua-model-id=gomodel:6918f23700003984|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 57677 – PomBase SPBC8D2.02c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260526 PomBase noctua-model-id=gomodel:6918f23700004102|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 57680 – PomBase SPAC630.11 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260526 PomBase noctua-model-id=gomodel:6918f23700004102|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 57685 – PomBase SPAC2G11.05c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260614 PomBase directly_positively_regulates(GO:1990606) noctua-model-id=gomodel:6918f23700004102|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 57686 – PomBase SPCC1442.17c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260108 PomBase noctua-model-id=gomodel:6918f23700004102|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 57759 – PomBase SPAPJ696.02 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260410 PomBase noctua-model-id=gomodel:6918f23700004722|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 57806 – PomBase SPBC6B1.03c enables GO:0003674 GO_REF:0000015 ECO:0000307 20251221 PomBase noctua-model-id=gomodel:6918f23700004722|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 57810 – PomBase SPAC23A1.17 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260406 PomBase noctua-model-id=gomodel:6918f23700004722|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58231 – PomBase SPBC18A7.02c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260109 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:693b3c0900002174
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58232 – PomBase SPAC2G11.03c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260427 PomBase directly_positively_regulates(GO:0005484) model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:693b3c0900002174
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58240 – PomBase SPAC26H5.07c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260109 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:693b3c0900002174
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58325 – PomBase SPCC1739.04c enables GO:0003674 GO_REF:0000015 ECO:0000307 20251220 PomBase noctua-model-id=gomodel:693b3c0900003452|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58375 – PomBase SPAC607.10 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260330 PomBase noctua-model-id=gomodel:693b3c0900003452|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58450 – PomBase SPBC4.01 enables GO:0003674 GO_REF:0000015 ECO:0000307 20251231 PomBase noctua-model-id=gomodel:693b3c0900004140|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58498 – PomBase SPAC31G5.07 enables GO:0003674 GO_REF:0000015 ECO:0000307 20251231 PomBase noctua-model-id=gomodel:693b3c0900004140|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58529 – PomBase SPAP7G5.03 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260101 PomBase noctua-model-id=gomodel:693b3c0900004140|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58637 – PomBase SPCC74.01 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260424 PomBase directly_positively_regulates(GO:0140522) noctua-model-id=gomodel:693b3c0900004859|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58651 – PomBase SPAC19A8.09 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260521 PomBase noctua-model-id=gomodel:693b3c0900004859|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58683 – PomBase SPAC29E6.03c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260103 PomBase noctua-model-id=gomodel:693b3c0900004859|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58685 – PomBase SPCC61.04c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260521 PomBase directly_negatively_regulates(GO:0097020) noctua-model-id=gomodel:693b3c0900004859|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 58693 – PomBase SPBC25H2.06c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260521 PomBase noctua-model-id=gomodel:693b3c0900004859|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 59140 – PomBase SPCC364.04c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260117 PomBase noctua-model-id=gomodel:696022cd00001937|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 59570 – PomBase SPAC823.17 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260318 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:69729a3800002651
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 59572 – PomBase SPBC19G7.19 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260128 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:69729a3800002651
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 59581 – PomBase SPAC589.04 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260128 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:69729a3800002651
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 59590 – PomBase SPBC27B12.10c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260226 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:69729a3800002651
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 59593 – PomBase SPAC17C9.06 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260128 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:69729a3800002651
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 59599 – PomBase SPAC17H9.17c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260415 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:69729a3800002651
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 59603 – PomBase SPBC409.19c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260128 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:69729a3800002651
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60083 – PomBase SPAC23H4.16c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260319 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:69729a3800006070
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60391 – PomBase SPBC19G7.19 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260225 PomBase noctua-model-id=gomodel:69729a3800007453|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60395 – PomBase SPAC167.04 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260218 PomBase directly_positively_regulates(GO:0008320) noctua-model-id=gomodel:69729a3800007453|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60430 – PomBase SPBC27B12.10c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260218 PomBase noctua-model-id=gomodel:69729a3800007453|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60435 – PomBase SPBC27.06c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260218 PomBase noctua-model-id=gomodel:69729a3800007453|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60438 – PomBase SPAC823.17 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260211 PomBase noctua-model-id=gomodel:69729a3800007453|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60440 – PomBase SPAC24H6.02c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260218 PomBase noctua-model-id=gomodel:69729a3800007453|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60896 – PomBase SPBC1347.04 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260218 PomBase model-state=production|noctua-model-id=gomodel:6994852c00000143|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60905 – PomBase SPBC27B12.10c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260218 PomBase model-state=production|noctua-model-id=gomodel:6994852c00000143|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60927 – PomBase SPAC823.17 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260218 PomBase model-state=production|noctua-model-id=gomodel:6994852c00000143|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 60930 – PomBase SPBC19G7.19 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260218 PomBase model-state=production|noctua-model-id=gomodel:6994852c00000143|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 61272 – PomBase SPBC27B12.10c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260701 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:6994852c00004096
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 61298 – PomBase SPAC823.17 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260701 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:6994852c00004096
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 61309 – PomBase SPBC19G7.19 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260225 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:6994852c00004096
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 61314 – PomBase SPBC1289.09 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260225 PomBase directly_positively_regulates(GO:0032977) noctua-model-id=gomodel:6994852c00005852|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 61317 – PomBase SPBC19G7.19 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260225 PomBase noctua-model-id=gomodel:6994852c00005852|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 61335 – PomBase SPAC3A12.16c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260415 PomBase noctua-model-id=gomodel:6994852c00005852|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 61337 – PomBase SPBC27.06c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260225 PomBase noctua-model-id=gomodel:6994852c00005852|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 61344 – PomBase SPBC27B12.10c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260225 PomBase noctua-model-id=gomodel:6994852c00005852|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 61345 – PomBase SPAC823.17 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260225 PomBase noctua-model-id=gomodel:6994852c00005852|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 63249 – PomBase SPAC6B12.06c enables GO:0003674 GO_REF:0000015 ECO:0000307 20260422 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:69d8496c00004645
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND
  • Line 64096 – PomBase SPAC8F11.06 enables GO:0003674 GO_REF:0000015 ECO:0000307 20260606 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:6a18a9ba00001740
    GORULE:0000011-ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

✅ GORULE:0000013-Taxon-appropriate annotation check

  • All checks passed - 0 violations

✅ GORULE:0000015-Dual species taxon check

  • All checks passed - 0 violations

✅ GORULE:0000016-With/From: IC annotations require a With/From GO ID

  • All checks passed - 0 violations

✅ GORULE:0000017-IDA annotations must not have a With/From entry

  • All checks passed - 0 violations

✅ GORULE:0000018-IPI annotations require a With/From entry

  • All checks passed - 0 violations

✅ GORULE:0000020-Automatic repair of annotations to merged or obsoleted terms

  • All checks passed - 0 violations

✅ GORULE:0000022-Check for, and filter, annotations made to retracted publications

  • All checks passed - 0 violations

⛔️ GORULE:0000027-Each identifier in GAF is valid

  • Total Violations: 13
  • Line 35906 – PomBase SPBC1773.17c enables GO:0030267 GO_REF:0000033 ECO:0000318 PANTHER:PTN0001079 20260114 PomBase has_input(CHEBI:36655) noctua-model-id=gomodel:665912ed00000015|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for PANTHER:PTN0001079
  • Line 36541 – PomBase SPBC215.08c enables GO:0004087 GO_REF:0000033 ECO:0000318 PANTHER:PTN008517424|RGD:2395|UniProtKB:P31327|MGI:891996 20260409 PomBase noctua-model-id=gomodel:665912ed00002626|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for MGI:891996
  • Line 37971 – PomBase SPBC14C8.04 enables GO:1990610 PMID:GO_REF:0000024 ECO:0000250 UniProtKB:P25605 20240725 PomBase directly_positively_regulates(GO:0003984) noctua-model-id=gomodel:6690711d00002706|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for PMID:GO_REF:0000024
  • Line 41120 – PomBase SPBC30D10.13c part_of GO:0045254 GO_REF:0000033 ECO:0000318 PANTHER:PTN000178975|UniProtKB:P11177|UniProtKB:C8VRK6|SGD:S0000000425|RGD:1359146 20260325 PomBase noctua-model-id=gomodel:67086be200000251|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for SGD:S0000000425
  • Line 43927 – PomBase SPCC794.07 part_of GO:0045254 GO_REF:0000033 ECO:0000318 PANTHER:PTN000568044|UniProtKB:P10515|UniProtKB:q5AYC2|SGD:S000003425|SGD:S000005015|RGD:619859 20260330 PomBase model-state=production|contributor=https://orcid.org/0009-0003-9059-1333|noctua-model-id=gomodel:678073a900002931
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for UniProtKB:q5AYC2
  • Line 44351 – PomBase SPAC23C4.19 is_active_in GO:0000785 GO_REF:0000111 ECO:0000305 GO:00032044 20260312 PomBase model-state=production|noctua-model-id=gomodel:6796b94c00000168|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for GO:00032044
  • Line 44372 – PomBase SPBC21C3.16c is_active_in GO:0000785 GO_REF:0000111 ECO:0000305 GO:00032044 20260312 PomBase model-state=production|noctua-model-id=gomodel:6796b94c00000168|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for GO:00032044
  • Line 46170 – PomBase SPAC11D3.09 enables GO:0008783 GO_REF:0000033 ECO:0000318 PANTHER:PTN000144486|UniProtKB:Q5JI38UniProtKB:P60651 20260410 PomBase part_of(GO:0009446),has_input(CHEBI:58145),has_output(CHEBI:16199),has_output(CHEBI:326268) noctua-model-id=gomodel:67b1629100004168|model-state=production|contributor=https://orcid.org/0009-0003-9059-1333
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for UniProtKB:Q5JI38UniProtKB:P60651
  • Line 53999 – PomBase SPBC30B4.06c enables GO:0160236 GO_REF:0000024 ECO:0000266 UniPRotKB:Q9Y2Z2 20250831 PomBase noctua-model-id=gomodel:689e7a5d00001359|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: UniPRotKB
  • Line 54222 – PomBase SPBC30B4.06c enables GO:0160236 GO_REF:0000024 ECO:0000266 UniPRotKB:Q9Y2Z2 20250820 PomBase model-state=production|noctua-model-id=gomodel:689e7a5d00003220|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000027-Each identifier in GAF is valid-Prefix not found in db-xrefs: UniPRotKB
  • Line 58235 – PomBase SPBC18A7.02c involved_in GO:0042147 GO_REF:0000033 ECO:0000318 PANTHER:PTN000477361|UniProtKB:Q96K49|UniProtKB:Q8NBN 20260109 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:693b3c0900002174
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for UniProtKB:Q8NBN
  • Line 58851 – PomBase SPBC4F6.18c involved_in GO:0006890 PMID:8001155 ECO:0000266 SGD:S00000235 20260430 PomBase noctua-model-id=gomodel:693b3c0900005911|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for SGD:S00000235
  • Line 59567 – PomBase SPAC17C9.06 is_active_in GO:0005741 GO_REF:00000111 ECO:0000305 20260128 PomBase model-state=production|contributor=https://orcid.org/0000-0001-6330-7526|noctua-model-id=gomodel:69729a3800002651
    GORULE:0000027-Each identifier in GAF is valid-Bad id syntax for GO_REF:00000111

✅ GORULE:0000030-Obsolete GO_REFs are not allowed

  • All checks passed - 0 violations

✅ GORULE:0000033-Group-specific Reference IDs are not allowed, only public reference IDs (PMID, doi, or GO_REF)

  • All checks passed - 0 violations

✅ GORULE:0000039-Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

  • All checks passed - 0 violations

✅ GORULE:0000042-Qualifier: IKR evidence code requires a NOT qualifier

  • All checks passed - 0 violations

✅ GORULE:0000043-Check for valid combination of evidence code and GO_REF

  • All checks passed - 0 violations

✅ GORULE:0000046-The 'with' field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to 'self-binding' terms.

  • All checks passed - 0 violations

✅ GORULE:0000050-Annotations to ISS, ISA and ISO should not be self-referential

  • All checks passed - 0 violations

✅ GORULE:0000053-'NOT' annotation should not have extension

  • All checks passed - 0 violations

✅ GORULE:0000055-References should have only one ID per ID space

  • All checks passed - 0 violations

✅ GORULE:0000063-Annotations using ISS/ISA/ISO evidence should refer to a gene product (in the 'with' column)

  • All checks passed - 0 violations

⚠️ GORULE:0000065-Term candidate for obsoletion

  • Total Violations: 11
  • Line 34310 –
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0000090
  • Line 34311 –
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0000090
  • Line 34341 –
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0000090
  • Line 34355 –
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0000092
  • Line 34410 –
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0000090
  • Line 34420 –
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0000090
  • Line 34720 – PomBase SPAC19G12.11 enables GO:0098772 PMID:38425362 ECO:0000304 20241126 PomBase directly_positively_regulates(GO:0160224) noctua-model-id=gomodel:662af8fa00000408|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0098772
  • Line 35925 – PomBase SPAC167.09 enables GO:0098772 GO_REF:0000033 ECO:0000318 PANTHER:PTN001997630|SGD:S000005102 20240601 PomBase part_of(GO:0006506),occurs_in(GO:0005789),directly_positively_regulates(GO:0120563) noctua-model-id=gomodel:665912ed00000192|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0098772
  • Line 46502 –
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0006090
  • Line 46509 – PomBase SPBC17G9.11c involved_in GO:0006090 GO_REF:0000033 ECO:0000318 PANTHER:PTN001821692|RGD:3262 20250328 PomBase noctua-model-id=gomodel:67c10cc400002026|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0006090
  • Line 48806 – PomBase SPAC27F1.02c enables GO:0098772 PMID:12796476 ECO:0000314 20250418 PomBase noctua-model-id=gomodel:67f85f2b00002096|model-state=production|contributor=https://orcid.org/0000-0001-6330-7526
    GORULE:0000065-Term candidate for obsoletion-Obsolete term GO:0098772