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GO-CAM-like Models Report — PomBase

Model ID Title Date modified Contributors Pipeline result Result details Warnings
680ad14200001682
purine-containing compound salvage (GO:0043101) 2026-08-28 Pascal Carme filtered Model has at least one activity with no causal relations
67c10cc400001799
protein lipoylation (GO:0009249) 2026-08-27 Val Wood success
678073a900002931
fatty acid biosynthetic process (GO:0006633) 2026-08-27 Kim Rutherford, Pascal Carme, Val Wood success
67086be200000519
mitochondrial translation (GO:0032543) 2026-08-26 Pascal Carme, Val Wood success
682fbcd000000353
mitochondrial tRNA modification (GO:0070900 ) methionine 2026-08-26 Helen Attrill, Val Wood success
6a7e360900000855
ERAD (Lumen and Membrane, Hrd1 ligase dependant) 2026-08-25 Val Wood success
6a7e360900001472
ERAD Cytosolic (Doa10 dependent) 2026-08-25 Val Wood filtered Model has no evidence for any assertions
67f85f2b00000199
protein insertion into ER membrane (GO:0045048), post-translational targeting to endoplasmic reticulum membrane (GO:0006620) PLUS import into Lumen (No term) and target proteins 2026-08-25 Val Wood success
6 warnings
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: transmembrane protein transporter activity [GO:0008320] (molecular_function) —part of→ protein insertion into ER membrane [GO:0045048] (biological_process)
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: Sec62/Sec63 complex [GO:0031207] (cellular_component) —has part→ sec66 Spom [PomBase:SPBC409.21] (information biomacromolecule)
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: Sec62/Sec63 complex [GO:0031207] (cellular_component) —has part→ sec67 Spom [PomBase:SPAC2F3.02] (information biomacromolecule)
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: Sec62/Sec63 complex [GO:0031207] (cellular_component) —has part→ sec62 Spom [PomBase:SPAC17G6.09] (information biomacromolecule)
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: transmembrane protein transporter activity [GO:0008320] (molecular_function) —occurs in→ endoplasmic reticulum membrane [GO:0005789] (anatomical entity)
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: Sec62/Sec63 complex [GO:0031207] (cellular_component) —has part→ sec63 Spom [PomBase:SPBC36B7.03] (information biomacromolecule)
67369e7600004623
aromatic amino acid biosynthetic process (GO:0009073) 2026-08-18 Kim Rutherford, Pascal Carme, Val Wood success
693b3c0900004859
endoplasmic reticulum to Golgi vesicle-mediated transport (GO:0006888) (partial) 2026-08-17 Val Wood success
69729a3800002651
beta barrel protein insertion into mitochondrial outer membrane (GO:7770063) 2026-08-14 Val Wood success
663d668500001911
'de novo' IMP biosynthetic process (GO:0006189) 2026-08-13 Pascal Carme success
6918f23700001300
cellular response to reactive oxygen species (GO:0034614) (partial) 2026-08-13 Val Wood filtered Model has at least one activity with no causal relations
6918f23700004001
early endosome to late endosome transport (GO:0045022) late endosome to vacuole transport (GO:0045324) 2026-08-13 Val Wood success
6870555700003085
pteridine-containing compound metabolic process (GO:0042558) - cytosolic 2026-08-13 Pascal Carme success
66a3e0bb00002988
pteridine-containing compound metabolic process (GO:0042558) - mitochondrial 2026-08-13 Pascal Carme success
67b1629100001098
pantothenate biosynthetic process (GO:0015940) 2026-08-12 Pascal Carme, Val Wood success
69a0c46f00003691
pyrimidine nucleobase metabolic process (GO:0006206) 2026-08-12 Pascal Carme success
66187e4700002284
septation initiation signaling (GO:0031028) 2026-08-12 Pascal Carme, Val Wood success
6918f23700004722
clathrin-dependent endocytosis (GO:0072583) 2026-08-08 Val Wood success
6a6bcaed00001223
formaldehyde catabolic process (GO:0046294), cellular detoxification of nitrogen compound (GO:0070458) (SPLIT) 2026-08-06 Val Wood filtered Model has at least one activity with no causal relations
67ae98b500000055
iron import into cell (GO:0033212) / siderophore biosynthetic process (GO:0019290), heme transmembrane transport (GO:0035351) 2026-08-06 Pascal Carme, Val Wood filtered Model has at least one activity with no causal relations
67369e7600002505
mitotic spindle assembly checkpoint signalling (GO:0007094) (ON) 2026-08-06 Val Wood success
662af8fa00000408
ubiquinone metabolic process (GO:0006743) 2026-08-03 Val Wood filtered Model has at least one activity with no causal relations
66a3e0bb00001342
'de novo' L-methionine biosynthetic process (GO:0071266), sulfate assimilation (GO:0000103), sulfite transmembrane transport. (GO:0000316), sulfate import across plasma membrane (GO:1902434) 2026-07-26 Val Wood success
69a0c46f00003187
alpha helical protein insertion into mitochondrial outer membrane (GO:7770059) 2026-07-26 Val Wood success
68b0f0d000008341
glutathione biosynthetic process (GO:0006750), glutathione catabolic process (GO:0006751), phytochelatin biosynthetic process (GO:0046938) glutathione metabolic process (GO:0006749) 2026-07-26 Val Wood filtered Model has at least one activity with no causal relations
6690711d00000331
iron-sulfur cluster assembly (GO:0016226) and iron-sulfur cluster export from the mitochondrion (GO:0140466) 2026-07-26 Pascal Carme, Val Wood filtered Model has at least one activity with no causal relations
6690711d00001545
L-serine biosynthetic process (GO:0006564), L-cysteine biosynthetic process (GO:0019344) 2026-07-26 Val Wood filtered Model has at least one activity with no causal relations
693b3c0900003452
ascospore-type prospore membrane formation (GO:0032120) ascospore wall biogenesis (GO:0070591) (partial) 2026-07-25 Val Wood success
693b3c0900004140
mating projection formation (GO:0031382), mating projection tip cell wall disassembly (GO:1904541), cytogamy (GO:0000755) 2026-07-25 Val Wood success
663d668500002178
phosphatidylinositol/phosphatidylinositol phosphate/ biosynthetic process (GO:0043647) (GO:0006661) 2026-07-24 Val Wood success
69d8496c00004645
mitochondrial ribosome assembly (GO:0061668) 2026-07-20 Val Wood success
66c7d41500000841
siroheme biosynthetic process (GO:0019354) and heme biosynthetic process (GO:0006783) 2026-07-19 Pascal Carme, Val Wood success
6994852c00000143
TOM-TIM22-mediated mitochondrial inner membrane protein insertion (GO:7770061) 2026-07-19 Val Wood success
69729a3800001390
G2/M transition of mitotic cell cycle (GO:0000086) (in progress) 2026-07-16 Val Wood success
665912ed00000192
GPI anchored protein biosynthetic process (GO:0180046) 2026-07-13 Val Wood success
67f85f2b00002506
mitochondrial proton-transporting ATP synthase complex assembly (GO:0033615) 2026-07-10 Val Wood success
69729a3800007453
protein import into mitochondrial matrix (GO:0030150) 2026-07-10 Val Wood success
6918f23700004102
endosome transport via multivesicular body sorting pathway (GO:0032509) 2026-07-08 Val Wood success
693b3c0900005911
retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (GO:0006890) 2026-07-08 Val Wood success
1 warning
  • INDIVIDUAL_HAS_MULTIPLE_TYPES: Individual has multiple types; using the first type for translation
6a46ef0600000404
RNA polymerase II preinitiation complex assembly (GO:0051123), transcription initiation at RNA polymerase II promoter (GO:0006367) (TATA-less promoter) 2026-07-05 Val Wood success
6994852c00005852
TOM-TIM23-SORT-mediated protein insertion into the mitochondrial inner membrane (GO:7770060) 2026-07-02 Val Wood success
6994852c00004096
protein import into mitochondrial intermembrane space (GO:0045041) 2026-07-01 Val Wood success
6a18a9ba00000016
Golgi to vacuole transport (GO:0006896) (ALP pathway) (partial) 2026-06-24 Val Wood success
662af8fa00000499
isoprenoid biosynthetic process (GO:0008299) 2026-06-24 Pascal Carme, Val Wood success
66187e4700001744
meiotic cohesion protection in anaphase I (GO:1990813) 2026-06-24 Val Wood success
6a18a9ba00001740
mitotic spindle pole body insertion into the nuclear envelope (GO:0140480) 2026-06-24 Val Wood success
69729a3800006070
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (GO:0000288) 2026-06-22 Pascal Carme, Val Wood success
6a2b236300001691
CENP-A containing chromatin assembly (GO:0034080) 2026-06-19 Val Wood success
693b3c0900002174
retrograde transport endosome to Golgi (GO:0042147) (partial) 2026-06-13 Val Wood success
69b3372b00000379
cellular response to copper ion starvation (GO:0035874) 2026-06-11 Val Wood success
68b0f0d000008746
nitrogen utilization (GO:0019740) (ammonia, proline, D-alanine, L-alanine) 2026-06-09 Val Wood success
663d668500002302
canonical glycolysis (GO:0061621) 2026-06-08 Pascal Carme, Val Wood success
6918f23700003984
Golgi to endosome transport (GO:0006895) (partial) 2026-06-08 Val Wood success
67086be200000251
pyruvate decarboxylation to acetyl-CoA (GO:0006086) 2026-06-08 Pascal Carme, Val Wood success
6918f23700003787
exocytosis (GO:0006887) for septum assembly (partial) 2026-05-29 Val Wood success
6796b94c00004743
glycerol metabolic process (GO:0006071) 2026-05-28 Pascal Carme, Val Wood success
665912ed00000015
tricarboxylic acid cycle (GO:0006099) 2026-05-22 Pascal Carme, Val Wood success
6a0784b700000059
mitochondrial protein quality control (GO:0141164) 2026-05-17 Val Wood success
667dfe8d00001131
L-lysine biosynthetic process (GO:0009085) 2026-05-04 Val Wood success
67f85f2b00002766
mitochondrial respiratory chain complex III assembly (GO:0034551) 2026-05-04 Val Wood filtered Model has at least one activity with no causal relations
671ae02600003478
cell integrity MAPK cascade (GO:0000196) 2026-05-02 Val Wood success
67b1629100000953
pentose-phosphate shunt (GO:0006098) 2026-05-02 Pascal Carme, Val Wood success
678073a900002636
coenzyme A biosynthetic process (GO:0015937) and acetyl-CoA biosynthetic process (GO:0006085) 2026-04-27 Pascal Carme filtered Model has at least one activity with no causal relations
698e557b00000821
NAD+ biosynthetic process (GO:0009435) 2026-04-27 Pascal Carme success
665912ed00002626
nitrogen cycle metabolic process (GO:0071941), urate catabolic process (GO:0019628) 2026-04-27 Pascal Carme, Val Wood success
5fadbcf000000632
p38MAPK cascade (GO:0038066) 2026-04-24 Val Wood success
6796b94c00002575
mitochondrial transcription (GO:0006390), mitochondrial polycistronic RNA processing, mitochondrial mRNA processing (GO:0090615) (GO:0140040) 2026-04-23 Val Wood success
693b3c0900000536
pheromone response MAPK cascade (GO:0071507) 2026-04-23 Val Wood success
6796b94c00005663
phosphatidic acid biosynthetic process (GO:0006654) and triglyceride biosynthetic process (GO:0019432) 2026-04-23 Pascal Carme success
67b1629100004168
polyamine biosynthetic process (GO:0006596) 2026-04-23 Pascal Carme, Val Wood success
6882d2b800002884
trehalose metabolic process (GO:0005991) 2026-04-23 Pascal Carme, Val Wood success
66c7d41500001171
vitamin B6 metabolic process (GO:0042816) 2026-04-22 Pascal Carme, Val Wood success
69c59f8a00002219
post-chaperonin tubulin folding pathway (GO:0007023) 2026-04-21 Val Wood success
663d668500000596
oxidative phosphorylation (GO:0006119) 2026-04-20 Kim Rutherford, Pascal Carme, Val Wood success
665912ed00000459
dolichol-linked oligosaccharide biosynthetic process (GO:0006488) (plus transfer and processing) 2026-04-19 Val Wood success
678073a900003902
L-proline biosynthetic process (GO:0055129), L-proline catabolic process (GO:0006562), L-glutamine biosynthetic process (GO:1901704) 2026-04-19 Pascal Carme, Val Wood success
66187e4700001573
RNA capping (GO:0036260) 2026-04-19 Pascal Carme, Val Wood success
689e7a5d00003050
mitochondrial tRNA modification (GO:0070900 ) aspartate 2026-04-17 Val Wood success
689e7a5d00000756
mitochondrial tRNA modification (GO:0070900 ) threonine 2026-04-17 Pascal Carme, Val Wood success
67f85f2b00001360
proteasome assembly (GO:0043248) 2026-04-17 Val Wood success
6690711d00002706
L-isoleucine biosynthetic process (GO:1901705), L-leucine biosynthetic process (GO:0009098) 2026-04-15 Pascal Carme, Val Wood success
67f85f2b00002096
mitotic actomyosin contractile ring assembly (GO:1903475) 2026-04-14 Val Wood success
678073a900000393
fermentation (GO:0006113) 2026-04-13 Pascal Carme, Val Wood success
67c10cc400002026
biotin import across plasma membrane (GO:1905135), biotin biosynthetic process (GO:0009102), biotinylated proteins 2026-04-08 Pascal Carme, Val Wood success
67c10cc400000148
L-glutamate biosynthetic process (GO:0097054), L-alanine biosynthetic process (GO:0042852), L-alanine catabolic process (GO:0042853) 2026-04-08 Pascal Carme, Val Wood filtered Model has at least one activity with no causal relations
6690711d00000916
L-arginine biosynthetic process (GO:0006526) 2026-04-07 Val Wood success
693b3c0900004611
nuclear migration involved in conjugation with cellular fusion (GO:0000743) 2026-04-05 Val Wood success
67086be200000363
cardiolipin metabolic process (GO:0032048) (Spom) 2026-04-03 Antonia Lock, Val Wood success
66c7d41500000963
thiamine-containing compound metabolic process (GO:0042723) 2026-04-02 Pascal Carme success
66c7d41500002687
mitotic cytokinesis, division site positioning (GO:1902408) (G2) 2026-03-31 Val Wood success
2 warnings
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: lateral plasma membrane [GO:0016328] (anatomical entity) —existence overlaps→ mitotic interphase [GO:0051329] (biological_process)
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: cell division site [GO:0032153] (anatomical entity) —existence overlaps→ mitotic M phase [GO:0000087] (biological_process)
68b0f0d000008920
regulation of carbohydrate utilization (GO:0043610) 2026-03-29 Val Wood success
682fbcd000006558
cristae formation (GO:0042407) 2026-03-28 Val Wood success
69c59f8a00000584
L-methionine cycle (GO:0033353) 2026-03-28 Val Wood success
665912ed00001983
subtelomeric heterochromatin formation (GO:0031509) 2026-03-25 Pascal Carme success
682fbcd000005519
mitochondrial fission (GO:0000266), mitochondrial fusion (GO:0008053) 2026-03-22 Val Wood success
66187e4700003150
adenylate cyclase-activating G protein-coupled receptor signaling pathway (GO:0007189) 2026-03-20 Pascal Carme success
696022cd00001857
gamma-aminobutyric acid catabolic process (GO:0009450) 2026-03-16 Val Wood success
6796b94c00000009
phosphatidylserine biosynthetic process (GO:0006659), phosphatidylethanolamine biosynthetic process (GO:0006646) and phosphatidylcholine biosynthetic process (GO:0006656) 2026-03-12 Pascal Carme filtered Model has at least one activity with no causal relations
6796b94c00006848
TORC1 signaling (GO:0038202) 2026-03-12 Val Wood success
6796b94c00000168
transcription elongation by RNA polymerase II (GO:0006368) (incomplete) 2026-03-12 Val Wood success
665912ed00000652
pericentric heterochromatin formation (GO:0031508) 2026-03-11 Pascal Carme success
66187e4700001781
silent mating-type cassette heterochromatin formation (GO:0030466) 2026-03-11 Pascal Carme, Val Wood filtered Model has at least one activity with no causal relations
67c10cc400000238
'de novo' cotranslational protein folding (GO:0051083) 2026-03-06 Val Wood success
6918f23700001200
cellular detoxification of methylglyoxal (GO:0140041) 2026-03-06 Val Wood success
6796b94c00000731
riboflavin biosynthetic process (GO:0009231), FMN biosynthetic process (GO:0009398), FAD biosynthetic process (GO:0006747) 2026-03-06 Pascal Carme, Val Wood success
67b1629100001554
glycine decarboxylation via glycine cleavage system (GO:0004375) 2026-03-01 Val Wood success
68b0f0d000008187
ergothioneine biosynthetic process (GO:0052699) 2026-03-01 Val Wood success
66c7d41500002088
ergosterol biosynthetic process (GO:0006696), intracellular sterol transport (GO:0032366) 2026-02-27 Val Wood success
67c10cc400003549
tRNA wobble guanine modification (GO:0002099) (nuclear/cytoplasmic) 2026-02-06 Pascal Carme, Val Wood success
685de18700006590
nitrogen utilization (GO:0019740) 2026-01-29 Pascal Carme, Val Wood success
689e7a5d00002128
mitochondrial tRNA modification (GO:0070900 ) serine 2026-01-25 Pascal Carme, Val Wood success
1 warning
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: tRNA 5-taurinomethyluridine synthase activity [GO:0160236] (molecular_function) —constitutively upstream of→ ACA codon-amino acid adaptor activity [GO:0033439] (molecular_function)
696022cd00001937
intra Golgi vesicle-mediated transport (GO:0006891) (partial). RETROGRADE 2026-01-17 Val Wood filtered Model has at least one activity with no causal relations
67c10cc400005826
malate-aspartate shuttle (GO:0043490), aspartate biosynthetic process (GO:0006532) 2026-01-17 Val Wood success
67e5e74400003073
mitochondrial cytochrome c oxidase assembly (GO:0033617) 2025-12-01 Val Wood success
689e7a5d00002556
mitochondrial tRNA modification (GO:0070900 ) (arginine) 2025-12-01 Pascal Carme, Val Wood success
689e7a5d00001868
mitochondrial tRNA modification (GO:0070900 ) (cysteine) 2025-12-01 Val Wood success
689e7a5d00002403
mitochondrial tRNA modification (GO:0070900 ) (leucine) 2025-12-01 Pascal Carme, Val Wood success
689e7a5d00000253
mitochondrial tRNA modification (GO:0070900 ) (valine) 2025-12-01 Pascal Carme, Val Wood success
689e7a5d00002668
mitochondrial tRNA modification (GO:0070900 ) alanine 2025-12-01 Pascal Carme, Val Wood success
1 warning
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: tRNA 5-taurinomethyluridine synthase activity [GO:0160236] (molecular_function) —constitutively upstream of→ ACA codon-amino acid adaptor activity [GO:0033439] (molecular_function)
689e7a5d00003220
mitochondrial tRNA modification (GO:0070900 ) glutamic acid (glutamate) and glutamine 2025-12-01 Pascal Carme, Val Wood success
1 warning
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: tRNA 5-taurinomethyluridine synthase activity [GO:0160236] (molecular_function) —constitutively upstream of→ ACA codon-amino acid adaptor activity [GO:0033439] (molecular_function)
689e7a5d00002283
mitochondrial tRNA modification (GO:0070900 ) lysine 2025-12-01 Pascal Carme, Val Wood success
1 warning
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: tRNA 5-taurinomethyluridine synthase activity [GO:0160236] (molecular_function) —constitutively upstream of→ ACA codon-amino acid adaptor activity [GO:0033439] (molecular_function)
689e7a5d00000968
mitochondrial tRNA modification (GO:0070900 ) proline 2025-12-01 Pascal Carme, Val Wood success
2 warnings
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: tRNA 5-taurinomethyluridine synthase activity [GO:0160236] (molecular_function) —constitutively upstream of→ ACA codon-amino acid adaptor activity [GO:0033439] (molecular_function)
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: proline-tRNA ligase activity [GO:0004827] (molecular_function) —constitutively upstream of→ ACA codon-amino acid adaptor activity [GO:0033439] (molecular_function)
689e7a5d00001359
mitochondrial tRNA modification (GO:0070900 ) tyrosine 2025-12-01 Pascal Carme, Val Wood success
67086be200002266
sphingolipid biosynthetic process (GO:0030148) 2025-12-01 Pascal Carme success
682fbcd000006484
cytochrome c biosynthetic process (GO:1903607) 2025-11-30 Val Wood success
68b0f0d000008252
UDP-N-acetylglucosamine biosynthetic process (GO:0006048) 2025-11-29 Val Wood success
67e5e74400004366
tRNA modification (GO:0006400) (nuclear/cytosolic) 2025-10-25 Val Wood success
67369e7600004023
ubiquinone biosynthetic process (Dmel) 2025-10-06 Helen Attrill, Rossana Zaru, Val Wood success
671ae02600003596
dolichol phosphate mannose biosynthetic process (GO:0180047) 2025-09-27 Val Wood success
6796b94c00002484
galactose catabolic process via UDP-galactose (Leloir pathway) (GO:0033499) (usually silenced) 2025-09-17 Pascal Carme, Val Wood success
689e7a5d00001626
mitochondrial tRNA modification (GO:0070900 ) (tryptophan) 2025-09-17 Val Wood success
678073a900003175
homoserine biosynthetic process (GO:0009090), threonine biosynthetic process (GO:0009088), glycine biosynthetic process (GO:0006545) 2025-08-31 Pascal Carme, Val Wood success
689e7a5d00002978
mitochondrial tRNA modification (GO:0070900 ) asparagine 2025-08-29 Val Wood success
689e7a5d00003374
mitochondrial tRNA modification (GO:0070900 ) isoleucine 2025-08-29 Val Wood success
689e7a5d00000462
mitochondrial tRNA modification (GO:0070900 ) (glycine) 2025-08-28 Val Wood success
6690711d00002904
L-histidine biosynthetic process (GO:0000105) 2025-08-27 Val Wood success
689e7a5d00001780
mitochondrial tRNA modification (GO:0070900 ) (phenylalanine) 2025-08-27 Val Wood success
689e7a5d00002819
mitochondrial tRNA modification (GO:0070900 ) histidine 2025-08-27 Val Wood success
671ae02600003548
dolichyl monophosphate biosynthetic process (GO:0043048) 2025-08-14 Val Wood success
67f85f2b00003383
mitochondrial respiratory chain complex II assembly (GO:0034553) 2025-07-23 Val Wood success
685de18700006767
phospholipid transport (GO:0015914) (ER/mitochondrion) 2025-07-22 Pascal Carme, Val Wood success

Release date
2026-08-28
Pipeline name
pipeline-from-goa
Pipeline branch
main
Generated on
2026-08-29T14:10:14+00:00
gocam-py version
0.12.0.post65.dev0+8382d25a