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GO-CAM-like Models Report — FlyBase

Model ID Title Date modified Contributors Pipeline result Result details Warnings
6a4c244800008076
Lipoate biosynthetic process and protein lipoylation (Dmel) 2026-08-27 Rossana Zaru success
682fbcd000000353
mitochondrial tRNA modification (GO:0070900 ) methionine 2026-08-26 Helen Attrill, Val Wood success
6918f23700002487
mitochondrial respiratory chain complex III assembly (Dmel) 2026-08-21 Helen Attrill success
6994852c00003678
mitochondrial TOM-TIM23-SORT presequence import pathway (Dmel) 2026-08-18 Helen Attrill success
6a4c244800004776
ETF-Etf-QO mediated regeneration of mitochondrial FAD (Dmel) 2026-08-07 Rossana Zaru success
6a6bcaed00000159
NADPH regeneration (isocitrate shuttle) (Dmel) 2026-08-07 Rossana Zaru success
6a4c244800008171
Saturated fatty acid beta oxidation (peroxisome) (Dmel) 2026-08-07 Rossana Zaru success
6a4c244800008243
citrate-malate shuttle (Dmel) 2026-08-06 Rossana Zaru success
6a6bcaed00000108
NADPH regeneration (malate-pyruvate shuttle) (Dmel) 2026-08-03 Rossana Zaru success
6a4c244800008823
mitochondrial fatty acid biosynthesis (Dmel) 2026-07-30 Rossana Zaru success
696022cd00003098
L-methionine cycle (Dmel) 2026-07-28 Rossana Zaru success
6a2b236300001870
Cardiolipin biosynthesis and remodelling (Dmel) 2026-07-23 Rossana Zaru success
685de18700007400
mitochondrial translation (Dmel) 2026-07-22 Helen Attrill success
1 warning
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: fMet-tRNA(fMet) [CHEBI:17119] (information biomacromolecule) —located in→ mitochondrial matrix [GO:0005759] (anatomical entity)
6a4c244800005690
FMN and FAD biosynthesis (Dmel) 2026-07-21 Rossana Zaru success
6a2b236300003160
Monounsaturated fatty acid beta-oxidation (enoyl-CoA isomerase step) (mitochondria) (Dmel) 2026-07-20 Rossana Zaru success
6a2b236300003309
Polyunsaturated fatty acid beta-oxidation (dienoyl-CoA isomerase, reductase, enoyl-CoA isomerase steps) (mitochondria) (Dmel) 2026-07-20 Rossana Zaru success
6a2b236300003217
Polyunsaturated fatty acid beta-oxidation (reductase, enoyl-CoA isomerase steps) (mitochondria) (Dmel) 2026-07-20 Rossana Zaru success
69a0c46f00003221
alpha helical protein insertion into mitochondrial outer membrane (Dmel) 2026-07-09 Helen Attrill success
69729a3800002581
beta barrel protein insertion into mitochondrial outer membrane (D.mel) 2026-07-09 Helen Attrill success
6994852c00000205
Mitochondrial TOM-TIM22 inner membrane carrier pathway (D.mel) 2026-07-09 Helen Attrill success
69b3372b00000249
protein import into mitochondrial intermembrane space (D.mel) 2026-07-09 Helen Attrill success
6a2b236300003036
Saturated fatty acid beta oxidation (mitochondrion) (Dmel) 2026-07-01 Rossana Zaru success
69c59f8a00001866
Ketolysis (Dmel) 2026-06-16 Rossana Zaru success
6882d2b800001265
mitochondrial large ribosomal subunit assembly (Dmel) 2026-06-11 Helen Attrill filtered Model has at least one activity with no causal relations
6a18a9ba00001455
Carnitine shuttle (Dmel) 2026-06-05 Rossana Zaru success
6a18a9ba00001069
Carnitine biosynthetic process (Dmel) 2026-06-03 Rossana Zaru success
6796b94c00000490
NAD(+) salvage (from nicotinate, nicotinamide, ribosylnicotinamide) (Dmel) 2026-06-02 Helen Attrill, Rossana Zaru success
6a18a9ba00000733
NAD+ mitochondrial import (Dmel) 2026-06-02 Helen Attrill success
69b3372b00001209
GABA biosynthesis (GABA shunt) (Dmel) 2026-05-29 Rossana Zaru success
6a18a9ba00000043
GABA catabolism (GABA shunt) (Dmel) 2026-05-29 Rossana Zaru success
662af8fa00000838
GDP-mannose biosynthetic process from glucose (Dmel) 2026-05-28 Rossana Zaru success
66187e4700000159
GDP-mannose biosynthetic process from mannose (Dmel) 2026-05-28 Rossana Zaru success
65d7e4ac00002167
Glycogen biosynthetic process (Dmel) 2026-05-28 Rossana Zaru success
67c10cc400006615
mitochondrial transcription & RNA processing (Dmel) 2026-05-28 Helen Attrill success
68b0f0d000006670
mitochondrial respirasome assembly (Dmel) 2026-05-12 Helen Attrill success
685de18700000512
mitochondrial tRNA U34 taurinomethyluridine modifications (Dmel) 2026-05-12 Helen Attrill success
654d809000000802
Model of MiR-4691-3p inhibition of cGAS-STING signaling in the cytosol (Human) 2026-05-12 Helen Attrill success
67f85f2b00003626
tRNA aminoacylation for mitochondrial protein translation (Dmel) 2026-05-12 Helen Attrill success
6918f23700002838
mitochondrial proton-transporting ATP synthase complex assembly (Dmel) 2026-05-11 Helen Attrill success
6994852c00000311
L-arginine biosynthetic process (from L-citrulline) and nitric oxide biosynthesis (Dmel) 2026-04-29 Rossana Zaru success
69ea894900001152
Polyamine biosynthetic process (Dmel) 2026-04-29 Rossana Zaru success
69ea894900001198
Polyamine catabolic process (Dmel) 2026-04-29 Rossana Zaru success
69ea894900000906
Glutathione catabolism (Dmel) 2026-04-27 Rossana Zaru success
6918f23700003552
Glutathione biosynthesis (Dmel) 2026-04-22 Rossana Zaru success
69d8496c00000431
sulfide oxidation (hydrogen sulfide catabolism) (Dmel) 2026-04-21 Rossana Zaru success
6870555700000357
GPI anchor biosynthetic process (Dmel) 2026-04-20 Rossana Zaru success
696022cd00003306
L-methionine salvage pathway (Dmel) 2026-04-20 Rossana Zaru success
67086be200000314
oxidative phosphorylation (Dmel) 2026-04-14 Helen Attrill, Rossana Zaru success
671ae02600000131
tricarboxylic acid cycle (Dmel) 2026-04-14 Rossana Zaru, Steven Marygold success
6918f23700003117
cristae formation (Dmel) 2026-04-10 Helen Attrill filtered Model has at least one activity with no causal relations
69d8496c00000049
Taurine biosynthesis (via L-cysteine or cysteamine) (Dmel) 2026-04-10 Rossana Zaru success
6086f4f200000223
canonical Wnt signaling pathway via wg-fz2 (D.mel) 2026-04-09 Helen Attrill success
2 warnings
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: arr Dmel [FB:FBgn0000119] (information biomacromolecule) —part of→ Wnt-Frizzled-LRP5/6 complex [GO:1990851] (cellular_component)
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: fz2 Dmel [FB:FBgn0016797] (information biomacromolecule) —part of→ Wnt-Frizzled-LRP5/6 complex [GO:1990851] (cellular_component)
645d887900000706
Smog GPCR signaling, epithelial tube formation (D.mel) 2026-04-09 Helen Attrill success
69c59f8a00001827
ketogenesis (Dmel) 2026-04-03 Rossana Zaru success
69c59f8a00001115
beta-alanine biosynthesis (via uracil or L-aspartate) (Dmel) 2026-03-31 Rossana Zaru filtered Model has at least one activity with no causal relations
69b3372b00004034
Peptidyl-lysine modification to peptidyl-hypusine (Dmel) 2026-03-26 Rossana Zaru success
68fac5ed00003466
Serotonin and melatonin biosynthesis (Dmel) 2026-03-19 Rossana Zaru success
60ad85f700000259
activin receptor signaling pathway via Actbeta-babo/put (D.mel) 2026-03-12 Helen Attrill success
1 warning
  • SKIPPED_FACT: 'activin receptor activity [GO:0017002] (molecular_function)' already has 'part of' relationship; ignoring 'part of' relationship to 'activin receptor signaling pathway [GO:0032924] (biological_process)'
60ad85f700000189
BMP signaling pathway via dpp-tkv/put (D.mel) 2026-03-12 Helen Attrill success
665912ed00001119
Chitin catabolic process (Dmel) 2026-03-12 Rossana Zaru success
60ad85f700001873
epidermal growth factor receptor signaling pathway via spi-Egfr (D.mel) 2026-03-12 Helen Attrill, Pascale Gaudet success
4 warnings
  • SKIPPED_FACT: 'DNA-binding transcription repressor activity, RNA polymerase II-specific [GO:0001227] (molecular_function)' already has 'part of' relationship; ignoring 'part of' relationship to 'epidermal growth factor receptor signaling pathway [GO:0007173] (biological_process)'
  • SKIPPED_FACT: 'DNA-binding transcription repressor activity, RNA polymerase II-specific [GO:0001227] (molecular_function)' already has 'part of' relationship; ignoring 'part of' relationship to 'negative regulation of transcription by RNA polymerase II [GO:0000122] (biological_process)'
  • SKIPPED_FACT: 'transcription corepressor activity [GO:0003714] (molecular_function)' already has 'part of' relationship; ignoring 'part of' relationship to 'negative regulation of transcription by RNA polymerase II [GO:0000122] (biological_process)'
  • SKIPPED_FACT: 'DNA-binding transcription activator activity, RNA polymerase II-specific [GO:0001228] (molecular_function)' already has 'part of' relationship; ignoring 'part of' relationship to 'positive regulation of transcription by RNA polymerase II [GO:0045944] (biological_process)'
68b0f0d000004975
Histamine metabolism in ommatidia (Dmel) 2026-03-12 Rossana Zaru success
60d5209a00000521
torso signaling pathway (D.mel) 2026-03-12 Helen Attrill success
60d5209a00000233
tumor necrosis factor-mediated signaling pathway via grnd-egr (D.mel) 2026-03-12 Helen Attrill success
682fbcd000002551
FAISL 2026-03-10 Helen Attrill, Lina Ma, Xinyu Zhou success
69a0c46f00002802
Tyramine and octopamine biosynthesis (Dmel) 2026-03-10 Rossana Zaru success
69a0c46f00001929
Dopamine biosynthesis (Dmel) 2026-03-05 Rossana Zaru success
689e7a5d00005122
Glycine biosynthetic process via L-serine (Dmel) 2026-02-26 Rossana Zaru success
68b0f0d000001084
L-lysine catabolic process (via L-saccharopine) (Dmel) 2026-02-12 Rossana Zaru success
69729a3800004491
L-asparagine biosynthesis (Dmel) 2026-02-11 Rossana Zaru success
69729a3800008027
L-glutamine catabolic process (glutaminolysis) (Dmel) 2026-02-11 Rossana Zaru success
68fac5ed00002580
L-tryptophan catabolic process (Dmel) 2026-02-11 Rossana Zaru success
682fbcd000002668
HMG 2026-01-22 Helen Attrill, Lina Ma, Miaomiao Wang, Shaosen Zhang, Xinyu Zhou success
1 warning
  • SKIPPED_FACT: 'ubiquitin protein ligase activity [GO:0061630] (molecular_function)' already has 'part of' relationship; ignoring 'part of' relationship to 'positive regulation of proteasomal ubiquitin-dependent protein catabolic process [GO:0032436] (biological_process)'
68b0f0d000003127
L-proline catabolic process to L-glutamate (Dmel) 2026-01-22 Rossana Zaru success
689e7a5d00006106
L-threonine catabolic process to glycine (Dmel) 2026-01-22 Rossana Zaru success
693b3c0900005843
L-cysteine biosynthesis (from L-homocysteine) (Dmel) 2026-01-21 Rossana Zaru success
696022cd00002295
Methylglyoxal catabolic process (glyoxalase system) (Dmel) 2026-01-19 Rossana Zaru success
6918f23700000247
L-phenylalanine and L-tyrosine catabolic process (Dmel) 2025-12-17 Rossana Zaru success
67c10cc400000479
dolichol-linked oligosaccharide biosynthesis (Dmel) 2025-12-16 Rossana Zaru success
66c7d41500002825
Chondroitin sulfate proteoglycan biosynthetic process (Dmel) 2025-12-09 Rossana Zaru success
6918f23700002690
L-hisitidine and histamine metabolism (Dmel) 2025-11-28 Rossana Zaru success
6918f23700002235
mitochondrial respiratory chain complex II assembly (Dmel) 2025-11-26 Helen Attrill success
6918f23700000689
mitochondrial respiratory chain complex I assembly (Dmel) 2025-11-24 Helen Attrill success
657ba49f00000239
Galactose catabolic process via UDP-galactose (Dmel) 2025-11-17 Rossana Zaru success
65a1f4f800000617
Canonical glycolysis (Dmel) 2025-10-10 Rossana Zaru, Steven Marygold success
668d5f2700000044
CMP-N-acetylneuraminate biosynthetic process (Dmel) 2025-10-10 Rossana Zaru success
65bc474400000671
Gluconeogenesis (from pyruvate to glucose 6-phosphate) (Dmel) 2025-10-10 Rossana Zaru success
689e7a5d00003607
L-serine biosynthetic process (Dmel) 2025-10-10 Rossana Zaru success
68b0f0d000006133
L-leucine catabolic process (Dmel) 2025-10-09 Rossana Zaru success
68b0f0d000003092
L-proline biosynthetic process (via L-glutamate) (Dmel) 2025-10-09 Rossana Zaru success
657ba49f00001358
trehalose biosynthesis from glucose-6-P (Dmel) 2025-10-06 Rossana Zaru success
657ba49f00001402
trehalose intracellular degradation (Dmel) 2025-10-06 Rossana Zaru success
67369e7600004023
ubiquinone biosynthetic process (Dmel) 2025-10-06 Helen Attrill, Rossana Zaru, Val Wood success
665912ed00002359
UDP-D-glucuronate biosynthetic process (from UDP-glucose) (Dmel) 2025-10-06 Rossana Zaru success
665912ed00002434
UDP-D-xylose biosynthetic process (Dmel) 2025-10-06 Rossana Zaru success
663d668500001806
UDP-N-acetylglucosamine biosynthetic process (de novo) (Dmel) 2025-10-06 Rossana Zaru success
680ad14200001222
N-glycan processing (ER trimming) (Dmel) 2025-10-03 Rossana Zaru success
682fbcd000002455
N-glycan processing (Golgi processing) (Dmel) 2025-10-03 Rossana Zaru success
662af8fa00000691
Pentose-phosphate shunt (Dmel) 2025-10-03 Rossana Zaru success
67b1629100003569
Protein O-glycosylation (procollagen O-galactosylation) (Dmel) 2025-10-03 Rossana Zaru success
67b1629100002770
Protein O-linked glycosylation (O-linked fucosylation) (Dmel) 2025-10-03 Rossana Zaru success
67b1629100002580
Protein O-linked glycosylation (O-linked GalNAcylation) (Dmel) 2025-10-03 Rossana Zaru success
67b1629100002611
Protein O-linked glycosylation (O-linked glucosylation) (Dmel) 2025-10-03 Rossana Zaru success
67e5e74400002207
pyruvate decarboxylation to acetyl-CoA (Dmel) 2025-10-03 Rossana Zaru success
67369e7600004561
3'-phosphoadenosine 5'-phosphosulfate biosynthetic process (Dmel) 2025-10-02 Rossana Zaru success
6796b94c00004884
Mo-molybdopterin cofactor biosynthetic process (Dmel) 2025-10-02 Antonia Lock, Helen Attrill, Rossana Zaru success
66187e4700001712
'de novo' GDP-L-fucose biosynthetic process (Dmel) 2025-10-01 Rossana Zaru success
66a3e0bb00001868
glycerophosphate shuttle (Dmel) 2025-10-01 Rossana Zaru success
65d7e4ac00002290
Glycogen catabolic process (Dmel) 2025-10-01 Rossana Zaru success
66c7d41500002919
Heparan sulfate proteoglycan biosynthetic process (Dmel) 2025-10-01 Rossana Zaru success
67369e7600002951
Heparan sulfate proteoglycan catabolic process (Dmel) 2025-10-01 Helen Attrill, Rossana Zaru success
66b5638000002185
malate-aspartate shuttle (Dmel) 2025-10-01 Rossana Zaru success
67369e7600002816
Chondroitin sulfate proteoglycan catabolic process (Dmel) 2025-09-30 Rossana Zaru success
665912ed00001096
Chitin biosynthetic process (Dmel) 2025-09-29 Rossana Zaru success
682fbcd000002579
dolichol phosphate mannose biosynthesis (Dmel) 2025-09-29 Rossana Zaru success
6882d2b800002705
Dolichyl phosphate biosynthesis (Dmel) 2025-09-29 Rossana Zaru success
65a1f4f800000368
Fructose biosynthetic process-conversion of glucose into fructose (Dmel) 2025-09-29 Rossana Zaru success
1 warning
  • INDIVIDUAL_HAS_MULTIPLE_TYPES: Individual has multiple types; using the first type for translation
68b0f0d000006178
L-isoleucine catabolic process (Dmel) 2025-09-25 Rossana Zaru success
68b0f0d000005992
L-valine catabolic process (Dmel) 2025-09-25 Rossana Zaru success
680ad14200000299
mitochondrial tRNA modification by methylation A9/G9 and pseudouridination U27/28 and U55 - generic tRNA target model (Dmel) 2025-09-23 Helen Attrill success
685de18700002179
mitochondrial tRNA modification C34 to 5-formylcytidine (Dmel) 2025-09-23 Helen Attrill success
1 warning
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: fMet-tRNA(fMet) [CHEBI:17119] (information biomacromolecule) —located in→ mitochondrial matrix [GO:0005759] (anatomical entity)
685de18700000198
mitochondrial tRNA modification G34 to Q (Dmel) 2025-09-23 Helen Attrill success
2 warnings
  • SKIPPED_FACT: Subject 'tRNA 3'-terminal CCA addition [GO:0001680] (biological_process)' has 'has input' relationship to 'tRNA [SO:0000253] (information biomacromolecule)', but that subject is not the molecular function of an activity unit; skipping molecular association
  • UNHANDLED_FACT: Fact not representable in GO-CAM model: tRNA 3'-terminal CCA addition [GO:0001680] (biological_process) —has input→ tRNA [SO:0000253] (information biomacromolecule)
685de18700000757
mitochondrial tRNA modifications position 37 (Dmel) 2025-09-23 Helen Attrill success
68b0f0d000005090
mitochondrial cytochrome c oxidase assembly (Dmel) 2025-09-16 Helen Attrill filtered Model has at least one activity with no causal relations
6882d2b800000941
mitochondrial small ribosomal subunit assembly (Dmel) 2025-09-16 Helen Attrill filtered Model has at least one activity with no causal relations
689e7a5d00005099
glycine decarboxylation via glycine cleavage system (Dmel) 2025-08-27 Rossana Zaru success
689e7a5d00004764
D-serine biosynthetic process (Dmel) 2025-08-26 Rossana Zaru success
6870555700001734
glucosylceramide biosynthetic process (Dmel) 2025-08-26 Rossana Zaru success
6796b94c00000657
iron-sulfur cluster assembly (Dmel) 2025-07-17 Helen Attrill success
685de18700003193
mitochondrial tRNA modification by methylation at C32 (Dmel) 2025-07-04 Helen Attrill success
682fbcd000004292
PARTICL 2025-06-26 Helen Attrill, Miaomiao Wang, Xinyu Zhou success
6796b94c00005746
heme biosynthetic process (Dmel) 2025-05-12 Helen Attrill success
66187e4700000045
Amino Acid Sensing - TORC1 pathway (D.mel) 2025-04-10 Helen Attrill success
1 warning
  • SKIPPED_FACT: 'negative regulation of TORC1 signaling [GO:1904262] (biological_process)' already has 'part of' relationship; ignoring 'part of' relationship to 'cellular response to amino acid starvation [GO:0034198] (biological_process)'
66187e4700001274
N6 -methyladenosine-modified lncRNA ARHGAP5-AS1 stabilises CSDE1 and coordinates oncogenic RNA regulons in hepatocellular carcinoma. PMID:36354136. (Human) 2024-04-23 Helen Attrill success
657ba49f00000907
Phosphorylation of LKB1 by PDK1 Inhibits Cell Proliferation and Organ Growth by Decreased Activation of AMPK. PMID:36899949. (D.mel) 2024-04-17 Helen Attrill success
60ad85f700000309
Notch signaling pathway via N-Dl (D.mel) 2023-05-25 Helen Attrill success
60ad85f700000110
receptor signaling pathway via JAK-STAT via upd2-dome (D.mel) 2023-05-25 Helen Attrill success
645d887900001468
Ufmylation of Atg9 (D.mel) 2023-05-24 Helen Attrill success

Release date
2026-08-28
Pipeline name
pipeline-from-goa
Pipeline branch
main
Generated on
2026-08-29T14:10:14+00:00
gocam-py version
0.12.0.post65.dev0+8382d25a