GO-CAM Variable Definitions

Generated on 2026-05-14
Class Variable Description
GocamStats uri URI identifier of the entity (contributor or provider).
GocamStats models Count of unique GO-CAM models processed for this entity.
GocamStats activity_units Total number of activities (activity units) in the model(s).
GocamStats activity_units_enabled_by_gene_product Count of activities enabled by a gene product (not a protein complex).
GocamStats activity_units_enabled_by_protein_complex Count of activities enabled by a protein complex.
GocamStats unique_gene_product_enablers Count of unique gene product terms that enable activities.
GocamStats unique_protein_complex_genes Count of unique genes that are members of protein complexes.
GocamStats unique_gene_product_and_protein_complex_gene_enablers Count of the union of gene product enablers and protein complex member genes (deduplicated).
GocamStats genes Total count of all genes (may include duplicates across activities).
GocamStats unique_references Count of unique reference strings across all evidence items.
GocamStats unique_pmid Count of unique PubMed IDs extracted from references.
GocamStats explicit_causal_relations Total count of causal associations on activities (may include duplicates).
GocamStats unique_explicit_causal_relations Count of unique activities that have causal associations.
GocamStats inputs Total count of input molecules (has_input or has_primary_input), may include duplicates.
GocamStats chemical_inputs Count of input molecules that are CHEBI terms.
GocamStats other_inputs Count of input molecules that are not CHEBI terms.
GocamStats unique_chemical_inputs Count of unique CHEBI input molecules.
GocamStats unique_other_inputs Count of unique non-CHEBI input molecules.
GocamStats outputs Total count of output molecules (has_output or has_primary_output), may include duplicates.
GocamStats chemical_outputs Count of output molecules that are CHEBI terms.
GocamStats other_outputs Count of output molecules that are not CHEBI terms.
GocamStats unique_chemical_outputs Count of unique CHEBI output molecules.
GocamStats unique_other_outputs Count of unique non-CHEBI output molecules.
GocamStats go_terms Total count of GO terms across all activities (may include duplicates).
GocamStats unique_go_terms Count of unique GO terms (identified by 'GO:' prefix).
GocamStats total_inferred_relations Total count of inferred relations (activity pairs connected via shared chemical molecules).
GocamStats list_inferred_relations List of inferred relations with lookup keys: activity_a, activity_a_genes, activity_b, activity_b_genes.
GocamStats unique_models List of unique model IDs processed for this entity.
GocamStats unique_activities List of unique activity IDs encountered.
GocamStats unique_enabled_by_gene_product List of unique gene product terms from EnabledByGeneProductAssociation.
GocamStats list_of_unique_protein_complex_genes List of unique genes that are members of protein complexes.
GocamStats list_enabled_by_gene_product List of all gene product enabler terms (may contain duplicates).
GocamStats list_enabled_by_protein_complex List of all protein complex enabler terms (the complex itself, not its member genes; may contain duplicates).
GocamStats list_of_unique_references List of unique reference strings from evidence items.
GocamStats list_of_unique_explicit_causal_relations List of unique activity IDs that have causal associations.
GocamStats list_explicit_causal_relations List of activity IDs with causal associations (may contain duplicates).
GocamStats unique_activity_unit_gene_product_enablers List of unique activity IDs that are enabled by gene products.
GocamStats unique_activity_unit_protein_complex_enablers List of unique activity IDs that are enabled by protein complexes.
GocamStats unique_protein_complex_in_activity_term List of unique protein complex terms (the complex itself, not its member genes).
GocamStats list_has_input_term List of all input molecule terms (covers both has_input and has_primary_input predicates).
GocamStats list_has_output_term List of all output molecule terms (covers both has_output and has_primary_output predicates).
GocamStats list_go_terms List of all GO terms found across the activity tree.
ModelDetails file_name Filename of the JSON source file for this model.
ModelDetails model_id Unique identifier of the GO-CAM model.
ModelDetails model_name Human-readable title/name of the GO-CAM model.
ModelDetails unique_activities List of unique activity IDs in this model.
ModelDetails model_status Status of the GO-CAM model (e.g. 'production', 'development', 'review'). Null if not set.
AggregateInfo entity Label for the aggregation level (e.g. 'Model', 'Curator', 'Group').
AggregateInfo total_entities_processed Count of unique models, curators, or groups aggregated.
AggregateInfo models_by_status Count of models for each status value (e.g. production, development, unknown).
AggregateInfo unique_activity_units Total count of unique activities across all entities.
AggregateInfo activity_units_enabled_by_gene_product_association Count of activities enabled by gene products across all entities.
AggregateInfo activity_units_enabled_by_protein_complex_association Count of activities enabled by protein complexes across all entities.
AggregateInfo genes Total count of genes summed across all entities.
AggregateInfo unique_gene_product_enablers Count of unique gene product terms across all entities.
AggregateInfo unique_protein_complex_terms Count of unique protein complex terms (the complexes themselves) across all entities.
AggregateInfo unique_member_protein_complex_genes Count of unique genes that are members of protein complexes across all entities.
AggregateInfo unique_gene_product_and_protein_complex_gene_enablers Count of the union of gene product enablers and protein complex member genes (deduplicated) across all entities.
AggregateInfo explicit_causal_relations Sum of explicit causal relations across all entities.
AggregateInfo unique_references Count of unique reference strings across all entities.
AggregateInfo unique_pmid Count of unique PubMed IDs across all entities.
AggregateInfo inputs Total count of input molecules across all entities.
AggregateInfo chemical_inputs Count of CHEBI input molecules across all entities.
AggregateInfo other_inputs Count of non-CHEBI input molecules across all entities.
AggregateInfo unique_chemical_inputs Count of unique CHEBI input molecules across all entities.
AggregateInfo unique_other_inputs Count of unique non-CHEBI input molecules across all entities.
AggregateInfo outputs Total count of output molecules across all entities.
AggregateInfo chemical_outputs Count of CHEBI output molecules across all entities.
AggregateInfo other_outputs Count of non-CHEBI output molecules across all entities.
AggregateInfo unique_chemical_outputs Count of unique CHEBI output molecules across all entities.
AggregateInfo unique_other_outputs Count of unique non-CHEBI output molecules across all entities.
AggregateInfo go_terms Total count of GO terms across all entities.
AggregateInfo unique_go_terms Count of unique GO terms across all entities.
AggregateInfo explicit_causal_relations Sum of explicit causal relations across all entities.
AggregateInfo total_inferred_relations Total count of inferred relations across all entities.
AggregateInfo list_inferred_relations List of inferred relations across all entities.
AggregateInfo unique_activities List of unique activity IDs across entities.
AggregateInfo unique_enabled_by_gene_product List of unique gene product enabler terms across entities.
AggregateInfo list_of_unique_references List of unique reference strings across entities.
AggregateInfo unique_activity_unit_gene_product_enablers List of unique activity IDs enabled by gene products across entities.
AggregateInfo unique_activity_unit_protein_complex_enablers List of unique activity IDs enabled by protein complexes across entities.
AggregateInfo unique_protein_complex_in_activity_term List of unique protein complex terms across all entities.
AggregateInfo list_of_unique_protein_complex_genes List of unique genes that are members of protein complexes across entities.
AggregateInfo list_model_details List of ModelDetails objects (only populated at model aggregate level).
AggregateInfo list_has_input_term List of all input molecule terms (covers both has_input and has_primary_input).
AggregateInfo list_has_output_term List of all output molecule terms (covers both has_output and has_primary_output).
AggregateInfo list_go_terms List of all GO terms across all entities.
ProteinComplexActivityInfo model_id The GO-CAM model ID containing this protein-complex-enabled activity.
ProteinComplexActivityInfo model_name Human-readable title/name of the GO-CAM model (from Model.title).
ProteinComplexActivityInfo activity_id The activity unit ID that is enabled by a protein complex.
ProteinComplexActivityInfo protein_complex_term The protein complex term that carries out the activity.
ProteinComplexActivityInfo molecular_function The molecular function GO term associated with the activity that is carried out by the gene product or complex
ProteinComplexActivityInfo model_status Status of the GO-CAM model (e.g. 'production', 'development', 'review'). Null if not set.
ProteinComplexActivityInfo unique_curators List of unique curator (contributor) URIs from the enabled_by provenances.
ProteinComplexActivityInfo unique_groups List of unique group (provided_by) URIs from the enabled_by provenances.